Man pages for pGRN
Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference
| data_transform | Pseudotime based Expression Data Transformation |
| get_dtw_dist_bidirectional | Bidirectional DTW Distance |
| get_dtw_dist_mat | DTW distance matrix for all genes |
| get_networks | Get the list of sub-networks |
| matrix2adj | Convert distance matrix to adjacency dataframe |
| module_networks | Get module level networks |
| pGRN | pGRN: creates gene regulatory network based on single cell... |
| pGRNDB | pGRN example data |
| plot_network | Plot stationary network |
| plot_network_i | Plot interactive network |
| run_dtw | Get network adjacency dataframe based on DTW method |
| run_granger_test | Use Granger-causality Test to get gene-gene regulatory... |
| slideWindows | Sliding Window Average |
