plot_network: Plot stationary network

In pGRN: Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference

Plot stationary network

Description

Plot stationary network through ggraph

Usage

plot_network(graph, ...)

Arguments

graph	a tbl_graph object
...	other parameters for ggraph

Value

ggraph

Examples

example_data <- pGRNDB
expression_matrix <- example_data[["expression"]]
pseudotime_list <- example_data[["ptime"]]$PseudoTime
dtw_dist_matrix <- get_dtw_dist_mat(expression_matrix,
                                    pseudotime_list,
                                    cores=1)
nets <- module_networks(dtw_dist_matrix,k=1,quantile_cutoff=50)
plot_network(nets[["module1"]])

pGRN documentation built on Jan. 18, 2023, 1:06 a.m.