README.md

In pQTLdata: A Collection of Proteome Panels and Meta-Data

output: github_document

A Collection of Proteome Panels and Meta-Data

It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (https://jinghuazhao.github.io/pQTLtools/). The package includes data from affinity-based panels such as 'Olink' (https://olink.com/) and 'SomaScan' (https://somalogic.com/), as well as mass spectrometry-based panels from 'CellCarta' (https://cellcarta.com/) and 'Seer' (https://seer.bio/). The metadata encompasses updated annotations and publication details.

Installation

1. Install from R

if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
remotes::install_github("jinghuazhao/pQTLdata")

1. Install from GitHub repository

git clone https://github.com/jinghuazhao/pQTLdata
R CMD INSTALL pQTLdata

1. Install from zip file

wget https://github.com/jinghuazhao/pQTLdata/archive/refs/heads/main.zip
unzip main

A summary of datasets

library(help=pQTLdata)
help(pQTLdata)

pQTLdata documentation built on April 12, 2025, 1:34 a.m.