paco: Procrustes Application to Cophylogenetic Analysis

Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.

Author
Juan Antonio Balbuena <j.a.balbuena@uv.es>, Timothee Poisot <tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>, Fernando Cagua <fernando@cagua.co>
Date of publication
2016-10-03 22:53:53
Maintainer
Matthew Hutchinson <matthewhutchinson15@gmail.com>
License
MIT + file LICENSE
Version
0.3.0
URLs

View on CRAN

Man pages

add_pcoord
Principal Coordinates analysis of phylogenetic distance...
gl_links
Gopher-lice interactions
gophertree
Gopher phylogeny
licetree
Lice phylogeny
PACo
Performs PACo analysis.
paco_links
Contribution of individual links
prepare_paco_data
Prepares the data (distance matrices and association matrix)...
residuals_paco
Return Procrustes residuals from a paco object

Files in this package

paco
paco/NAMESPACE
paco/data
paco/data/gopherlice.rda
paco/R
paco/R/residuals_paco.r
paco/R/coordpcoa.r
paco/R/paco_data.r
paco/R/PACo.r
paco/R/add_pcoord.r
paco/R/prepare_data.r
paco/R/paco_links.r
paco/README.md
paco/MD5
paco/DESCRIPTION
paco/man
paco/man/add_pcoord.Rd
paco/man/prepare_paco_data.Rd
paco/man/licetree.Rd
paco/man/paco_links.Rd
paco/man/gophertree.Rd
paco/man/gl_links.Rd
paco/man/residuals_paco.Rd
paco/man/PACo.Rd
paco/LICENSE