paco: Procrustes Application to Cophylogenetic Analysis
Version 0.3.1

Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.

Browse man pages Browse package API and functions Browse package files

AuthorJuan Antonio Balbuena <j.a.balbuena@uv.es>, Timothee Poisot <tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>, Fernando Cagua <fernando@cagua.co>
Date of publication2016-12-05 21:45:01
MaintainerMatthew Hutchinson <matthewhutchinson15@gmail.com>
LicenseMIT + file LICENSE
Version0.3.1
URL http://www.uv.es/cophylpaco/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("paco")

Man pages

add_pcoord: Principal Coordinates analysis of phylogenetic distance...
gl_links: Gopher-lice interactions
gophertree: Gopher phylogeny
licetree: Lice phylogeny
PACo: Performs PACo analysis.
paco_links: Contribution of individual links
prepare_paco_data: Prepares the data (distance matrices and association matrix)...
residuals_paco: Return Procrustes residuals from a paco object

Functions

PACo Man page Source code
add_pcoord Man page Source code
coordpcoa Source code
gl_links Man page
gophertree Man page
licetree Man page
paco_links Man page Source code
prepare_paco_data Man page Source code
residuals_paco Man page Source code
single_paco_link Source code

Files

NAMESPACE
data
data/gopherlice.rda
R
R/residuals_paco.r
R/coordpcoa.r
R/paco_data.r
R/PACo.r
R/add_pcoord.r
R/prepare_data.r
R/paco_links.r
README.md
MD5
DESCRIPTION
man
man/add_pcoord.Rd
man/prepare_paco_data.Rd
man/licetree.Rd
man/paco_links.Rd
man/gophertree.Rd
man/gl_links.Rd
man/residuals_paco.Rd
man/PACo.Rd
LICENSE
paco documentation built on May 19, 2017, 11:04 a.m.