paleofire: Analysis of Charcoal Records from the Global Charcoal Database
Version 1.1.9

Tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database. Main functionalities includes data extraction and sites selection, transformation and interpolation of the charcoal records as well as compositing.

Browse man pages Browse package API and functions Browse package files

AuthorGlobal Paleofire Working Group <paleofire@univ-fcomte.fr>
Date of publication2016-10-03 23:48:48
MaintainerOlivier Blarquez <blarquez@gmail.com>
LicenseGPL (>= 2)
Version1.1.9
URL http://gpwg.paleofire.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("paleofire")

Man pages

checkGCDversion: Check GCD package install
coast: coast
contiguous: Are cores sampled contiguously?
contrib.pfCompositeLF: contrib.pfCompositeLF
kdffreq: Fire frequency using kernel density
paleofire-internal: Internal paleofire functions
paleofire-package: paleofire: A package for the Global Charcoal Database
pfAddData: Add user defined charcoal data series to paleofire
pfBoxCox: Box-Cox transformation of Charcoal series
pfCircular: Circular block bootstrap procedure applied to charcoal...
pfComposite: Produce a composite serie from multiple charcoal records
pfCompositeLF: Produce a composite serie from multiple charcoal records...
pfDiagnostic: Print diagnostic pdf for individual transformed series
pfDotMap: Produce maps of paleofire data
pfExtract: Extract charcoal data for a list of sites
pfGridding: Produce gridded maps of transformed charcoal values.
pfInteractive: GCD sites interactive selection
pfKruskal: Analyse composite records by a Kruskal-Wallis ANOVA
pfMinMax: MiniMax transformation of a charcoal serie
pfPublication: Get citations for charcoal sites
pfResolution: Calculates age resolution indicators for charcoal records
pfSimpleGrid: Produce simple gridded maps of paleofire data
pfSiteSel: GCD sites selection methods
pfToKml: Export selected site to Google Earth kml format
pfTransform: Transform charcoal data for unique to multiple series
plot.CHAR: Plot CHAR
plot.contiguous: Plot "contiguous" object
plot.kdffreq: plot.kdffreq
plot.pfCircular: plot.pfCircular
plot.pfComposite: plot.pfComposite
plot.pfCompositeLF: plot.pfCompositeLF
plot.pfGridding: Plot a "pfGridding" object.
plot.pfKruskal: Plot a "pfKruskal" object.
plot.pfSiteSel: plot.pfSiteSel
plot.potveg: plot.potveg
potveg: potveg
pretreatment: Calculate particules accumulation rates for sediment records
rbind.pfAddData: rbind.pfAddData
summary.pfSiteSel: summary.pfSiteSel
triCube: Tukey's Tricube weight function

Functions

bestLoess Man page Source code
bootCI Man page Source code
checkGCDversion Man page Source code
coast Man page
contiguous Man page Source code
contrib Man page Source code
contrib.pfCompositeLF Man page Source code
countries Man page
dem Man page
haverdist Man page Source code
influx Man page Source code
kdffreq Man page Source code
loessGCV Man page Source code
onAttach Source code
paleofire Man page
paleofire-internal Man page
paleofire-package Man page
pfAddData Man page Source code
pfBoxCox Man page Source code
pfCircular Man page Source code
pfComposite Man page Source code
pfCompositeLF Man page Source code
pfDiagnostic Man page Source code
pfDotMap Man page Source code
pfExtract Man page Source code
pfGridding Man page Source code
pfInteractive Man page Source code
pfKruskal Man page Source code
pfMinMax Man page Source code
pfPublication Man page Source code
pfResolution Man page Source code
pfSimpleGrid Man page Source code
pfSiteSel Man page Source code
pfToKml Man page Source code
pfTransform Man page Source code
plot.CHAR Man page Source code
plot.contiguous Man page Source code
plot.kdffreq Man page Source code
plot.pfCircular Man page Source code
plot.pfComposite Man page Source code
plot.pfCompositeLF Man page Source code
plot.pfGridding Man page Source code
plot.pfKruskal Man page Source code
plot.pfSiteSel Man page Source code
plot.potveg Man page Source code
potveg Man page Source code
pretreatment Man page Source code
rbind.pfAddData Man page Source code
summary.pfSiteSel Man page Source code
triCube Man page Source code

Files

inst
inst/COPYING
inst/CITATION
inst/THANKS
inst/doc
inst/doc/paleofire-paper.pdf
inst/doc/paleofire-paper.Rnw
inst/doc/paleofire-paper.R
NAMESPACE
demo
demo/00Index
demo/example-1.R
NEWS
data
data/dem.rda
data/datalist
data/coast.rda
data/countries.rda
R
R/pfCircular.R
R/pfKruskal.R
R/pretreatment.R
R/pfSiteSel.R
R/pfBoxCox.R
R/paleofire-package.R
R/pfToKml.R
R/pfResolution.R
R/potveg.R
R/pfPublication.R
R/contiguous.R
R/kdffreq.R
R/pfExtract.R
R/pfDotMap.r
R/pfComposite.R
R/pfMinMax.R
R/pfCompositeLF.R
R/pfSimpleGrid.r
R/pfTransform.R
R/pfDiagnostic.R
R/pfAddData.R
R/pfGridding.R
R/pfInteractive.R
R/zzz.R
vignettes
vignettes/paleofire-paper.bib
vignettes/paleofire-paper.Rnw
vignettes/paleofire-paper-fig3.pdf
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/plot.pfGridding.Rd
man/triCube.Rd
man/pfPublication.Rd
man/pfMinMax.Rd
man/plot.pfSiteSel.Rd
man/potveg.Rd
man/pfSiteSel.Rd
man/plot.pfCompositeLF.Rd
man/coast.Rd
man/plot.contiguous.Rd
man/pfResolution.Rd
man/pfKruskal.Rd
man/plot.pfKruskal.Rd
man/pfInteractive.Rd
man/contiguous.Rd
man/plot.CHAR.Rd
man/pfExtract.Rd
man/paleofire-package.Rd
man/pfDotMap.Rd
man/contrib.pfCompositeLF.Rd
man/rbind.pfAddData.Rd
man/pfSimpleGrid.Rd
man/plot.potveg.Rd
man/checkGCDversion.Rd
man/pfCircular.Rd
man/kdffreq.Rd
man/pfTransform.Rd
man/pfCompositeLF.Rd
man/pfToKml.Rd
man/summary.pfSiteSel.Rd
man/plot.pfCircular.Rd
man/plot.pfComposite.Rd
man/pfGridding.Rd
man/plot.kdffreq.Rd
man/pfDiagnostic.Rd
man/pfComposite.Rd
man/pretreatment.Rd
man/pfAddData.Rd
man/paleofire-internal.Rd
man/pfBoxCox.Rd
paleofire documentation built on May 20, 2017, 1:35 a.m.