paleofire: Analysis of Charcoal Records from the Global Charcoal Database

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Tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database. Main functionalities includes data extraction and sites selection, transformation and interpolation of the charcoal records as well as compositing.

Author
Global Paleofire Working Group <paleofire@univ-fcomte.fr>
Date of publication
2016-10-03 23:48:48
Maintainer
Olivier Blarquez <blarquez@gmail.com>
License
GPL (>= 2)
Version
1.1.9
URLs

View on CRAN

Man pages

checkGCDversion
Check GCD package install
coast
coast
contiguous
Are cores sampled contiguously?
contrib.pfCompositeLF
contrib.pfCompositeLF
kdffreq
Fire frequency using kernel density
paleofire-internal
Internal paleofire functions
paleofire-package
paleofire: A package for the Global Charcoal Database
pfAddData
Add user defined charcoal data series to paleofire
pfBoxCox
Box-Cox transformation of Charcoal series
pfCircular
Circular block bootstrap procedure applied to charcoal...
pfComposite
Produce a composite serie from multiple charcoal records
pfCompositeLF
Produce a composite serie from multiple charcoal records...
pfDiagnostic
Print diagnostic pdf for individual transformed series
pfDotMap
Produce maps of paleofire data
pfExtract
Extract charcoal data for a list of sites
pfGridding
Produce gridded maps of transformed charcoal values.
pfInteractive
GCD sites interactive selection
pfKruskal
Analyse composite records by a Kruskal-Wallis ANOVA
pfMinMax
MiniMax transformation of a charcoal serie
pfPublication
Get citations for charcoal sites
pfResolution
Calculates age resolution indicators for charcoal records
pfSimpleGrid
Produce simple gridded maps of paleofire data
pfSiteSel
GCD sites selection methods
pfToKml
Export selected site to Google Earth kml format
pfTransform
Transform charcoal data for unique to multiple series
plot.CHAR
Plot CHAR
plot.contiguous
Plot "contiguous" object
plot.kdffreq
plot.kdffreq
plot.pfCircular
plot.pfCircular
plot.pfComposite
plot.pfComposite
plot.pfCompositeLF
plot.pfCompositeLF
plot.pfGridding
Plot a "pfGridding" object.
plot.pfKruskal
Plot a "pfKruskal" object.
plot.pfSiteSel
plot.pfSiteSel
plot.potveg
plot.potveg
potveg
potveg
pretreatment
Calculate particules accumulation rates for sediment records
rbind.pfAddData
rbind.pfAddData
summary.pfSiteSel
summary.pfSiteSel
triCube
Tukey's Tricube weight function

Files in this package

paleofire
paleofire/inst
paleofire/inst/COPYING
paleofire/inst/CITATION
paleofire/inst/THANKS
paleofire/inst/doc
paleofire/inst/doc/paleofire-paper.pdf
paleofire/inst/doc/paleofire-paper.Rnw
paleofire/inst/doc/paleofire-paper.R
paleofire/NAMESPACE
paleofire/demo
paleofire/demo/00Index
paleofire/demo/example-1.R
paleofire/NEWS
paleofire/data
paleofire/data/dem.rda
paleofire/data/datalist
paleofire/data/coast.rda
paleofire/data/countries.rda
paleofire/R
paleofire/R/pfCircular.R
paleofire/R/pfKruskal.R
paleofire/R/pretreatment.R
paleofire/R/pfSiteSel.R
paleofire/R/pfBoxCox.R
paleofire/R/paleofire-package.R
paleofire/R/pfToKml.R
paleofire/R/pfResolution.R
paleofire/R/potveg.R
paleofire/R/pfPublication.R
paleofire/R/contiguous.R
paleofire/R/kdffreq.R
paleofire/R/pfExtract.R
paleofire/R/pfDotMap.r
paleofire/R/pfComposite.R
paleofire/R/pfMinMax.R
paleofire/R/pfCompositeLF.R
paleofire/R/pfSimpleGrid.r
paleofire/R/pfTransform.R
paleofire/R/pfDiagnostic.R
paleofire/R/pfAddData.R
paleofire/R/pfGridding.R
paleofire/R/pfInteractive.R
paleofire/R/zzz.R
paleofire/vignettes
paleofire/vignettes/paleofire-paper.bib
paleofire/vignettes/paleofire-paper.Rnw
paleofire/vignettes/paleofire-paper-fig3.pdf
paleofire/README.md
paleofire/MD5
paleofire/build
paleofire/build/vignette.rds
paleofire/DESCRIPTION
paleofire/man
paleofire/man/plot.pfGridding.Rd
paleofire/man/triCube.Rd
paleofire/man/pfPublication.Rd
paleofire/man/pfMinMax.Rd
paleofire/man/plot.pfSiteSel.Rd
paleofire/man/potveg.Rd
paleofire/man/pfSiteSel.Rd
paleofire/man/plot.pfCompositeLF.Rd
paleofire/man/coast.Rd
paleofire/man/plot.contiguous.Rd
paleofire/man/pfResolution.Rd
paleofire/man/pfKruskal.Rd
paleofire/man/plot.pfKruskal.Rd
paleofire/man/pfInteractive.Rd
paleofire/man/contiguous.Rd
paleofire/man/plot.CHAR.Rd
paleofire/man/pfExtract.Rd
paleofire/man/paleofire-package.Rd
paleofire/man/pfDotMap.Rd
paleofire/man/contrib.pfCompositeLF.Rd
paleofire/man/rbind.pfAddData.Rd
paleofire/man/pfSimpleGrid.Rd
paleofire/man/plot.potveg.Rd
paleofire/man/checkGCDversion.Rd
paleofire/man/pfCircular.Rd
paleofire/man/kdffreq.Rd
paleofire/man/pfTransform.Rd
paleofire/man/pfCompositeLF.Rd
paleofire/man/pfToKml.Rd
paleofire/man/summary.pfSiteSel.Rd
paleofire/man/plot.pfCircular.Rd
paleofire/man/plot.pfComposite.Rd
paleofire/man/pfGridding.Rd
paleofire/man/plot.kdffreq.Rd
paleofire/man/pfDiagnostic.Rd
paleofire/man/pfComposite.Rd
paleofire/man/pretreatment.Rd
paleofire/man/pfAddData.Rd
paleofire/man/paleofire-internal.Rd
paleofire/man/pfBoxCox.Rd