paleofire: Analysis of Charcoal Records from the Global Charcoal Database

Tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database. Main functionalities includes data extraction and sites selection, transformation and interpolation of the charcoal records as well as compositing.

AuthorGlobal Paleofire Working Group <paleofire@univ-fcomte.fr>
Date of publication2016-10-03 23:48:48
MaintainerOlivier Blarquez <blarquez@gmail.com>
LicenseGPL (>= 2)
Version1.1.9
http://gpwg.paleofire.org

View on CRAN

Man pages

checkGCDversion: Check GCD package install

coast: coast

contiguous: Are cores sampled contiguously?

contrib.pfCompositeLF: contrib.pfCompositeLF

kdffreq: Fire frequency using kernel density

paleofire-internal: Internal paleofire functions

paleofire-package: paleofire: A package for the Global Charcoal Database

pfAddData: Add user defined charcoal data series to paleofire

pfBoxCox: Box-Cox transformation of Charcoal series

pfCircular: Circular block bootstrap procedure applied to charcoal...

pfComposite: Produce a composite serie from multiple charcoal records

pfCompositeLF: Produce a composite serie from multiple charcoal records...

pfDiagnostic: Print diagnostic pdf for individual transformed series

pfDotMap: Produce maps of paleofire data

pfExtract: Extract charcoal data for a list of sites

pfGridding: Produce gridded maps of transformed charcoal values.

pfInteractive: GCD sites interactive selection

pfKruskal: Analyse composite records by a Kruskal-Wallis ANOVA

pfMinMax: MiniMax transformation of a charcoal serie

pfPublication: Get citations for charcoal sites

pfResolution: Calculates age resolution indicators for charcoal records

pfSimpleGrid: Produce simple gridded maps of paleofire data

pfSiteSel: GCD sites selection methods

pfToKml: Export selected site to Google Earth kml format

pfTransform: Transform charcoal data for unique to multiple series

plot.CHAR: Plot CHAR

plot.contiguous: Plot "contiguous" object

plot.kdffreq: plot.kdffreq

plot.pfCircular: plot.pfCircular

plot.pfComposite: plot.pfComposite

plot.pfCompositeLF: plot.pfCompositeLF

plot.pfGridding: Plot a "pfGridding" object.

plot.pfKruskal: Plot a "pfKruskal" object.

plot.pfSiteSel: plot.pfSiteSel

plot.potveg: plot.potveg

potveg: potveg

pretreatment: Calculate particules accumulation rates for sediment records

rbind.pfAddData: rbind.pfAddData

summary.pfSiteSel: summary.pfSiteSel

triCube: Tukey's Tricube weight function

Files in this package

paleofire
paleofire/inst
paleofire/inst/COPYING
paleofire/inst/CITATION
paleofire/inst/THANKS
paleofire/inst/doc
paleofire/inst/doc/paleofire-paper.pdf
paleofire/inst/doc/paleofire-paper.Rnw
paleofire/inst/doc/paleofire-paper.R
paleofire/NAMESPACE
paleofire/demo
paleofire/demo/00Index
paleofire/demo/example-1.R
paleofire/NEWS
paleofire/data
paleofire/data/dem.rda
paleofire/data/datalist
paleofire/data/coast.rda
paleofire/data/countries.rda
paleofire/R
paleofire/R/pfCircular.R paleofire/R/pfKruskal.R paleofire/R/pretreatment.R paleofire/R/pfSiteSel.R paleofire/R/pfBoxCox.R paleofire/R/paleofire-package.R paleofire/R/pfToKml.R paleofire/R/pfResolution.R paleofire/R/potveg.R paleofire/R/pfPublication.R paleofire/R/contiguous.R paleofire/R/kdffreq.R paleofire/R/pfExtract.R
paleofire/R/pfDotMap.r
paleofire/R/pfComposite.R paleofire/R/pfMinMax.R paleofire/R/pfCompositeLF.R
paleofire/R/pfSimpleGrid.r
paleofire/R/pfTransform.R paleofire/R/pfDiagnostic.R paleofire/R/pfAddData.R paleofire/R/pfGridding.R paleofire/R/pfInteractive.R paleofire/R/zzz.R
paleofire/vignettes
paleofire/vignettes/paleofire-paper.bib
paleofire/vignettes/paleofire-paper.Rnw
paleofire/vignettes/paleofire-paper-fig3.pdf
paleofire/README.md
paleofire/MD5
paleofire/build
paleofire/build/vignette.rds
paleofire/DESCRIPTION
paleofire/man
paleofire/man/plot.pfGridding.Rd paleofire/man/triCube.Rd paleofire/man/pfPublication.Rd paleofire/man/pfMinMax.Rd paleofire/man/plot.pfSiteSel.Rd paleofire/man/potveg.Rd paleofire/man/pfSiteSel.Rd paleofire/man/plot.pfCompositeLF.Rd paleofire/man/coast.Rd paleofire/man/plot.contiguous.Rd paleofire/man/pfResolution.Rd paleofire/man/pfKruskal.Rd paleofire/man/plot.pfKruskal.Rd paleofire/man/pfInteractive.Rd paleofire/man/contiguous.Rd paleofire/man/plot.CHAR.Rd paleofire/man/pfExtract.Rd paleofire/man/paleofire-package.Rd paleofire/man/pfDotMap.Rd paleofire/man/contrib.pfCompositeLF.Rd paleofire/man/rbind.pfAddData.Rd paleofire/man/pfSimpleGrid.Rd paleofire/man/plot.potveg.Rd paleofire/man/checkGCDversion.Rd paleofire/man/pfCircular.Rd paleofire/man/kdffreq.Rd paleofire/man/pfTransform.Rd paleofire/man/pfCompositeLF.Rd paleofire/man/pfToKml.Rd paleofire/man/summary.pfSiteSel.Rd paleofire/man/plot.pfCircular.Rd paleofire/man/plot.pfComposite.Rd paleofire/man/pfGridding.Rd paleofire/man/plot.kdffreq.Rd paleofire/man/pfDiagnostic.Rd paleofire/man/pfComposite.Rd paleofire/man/pretreatment.Rd paleofire/man/pfAddData.Rd paleofire/man/paleofire-internal.Rd paleofire/man/pfBoxCox.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.