paleofire: Analysis of Charcoal Records from the Global Charcoal Database

Tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database. Main functionalities includes data extraction and sites selection, transformation and interpolation of the charcoal records as well as compositing.

AuthorGlobal Paleofire Working Group <paleofire@univ-fcomte.fr>
Date of publication2016-10-03 23:48:48
MaintainerOlivier Blarquez <blarquez@gmail.com>
LicenseGPL (>= 2)
Version1.1.9
http://gpwg.paleofire.org

View on CRAN

Man pages

checkGCDversion: Check GCD package install

coast: coast

contiguous: Are cores sampled contiguously?

contrib.pfCompositeLF: contrib.pfCompositeLF

kdffreq: Fire frequency using kernel density

paleofire-internal: Internal paleofire functions

paleofire-package: paleofire: A package for the Global Charcoal Database

pfAddData: Add user defined charcoal data series to paleofire

pfBoxCox: Box-Cox transformation of Charcoal series

pfCircular: Circular block bootstrap procedure applied to charcoal...

pfComposite: Produce a composite serie from multiple charcoal records

pfCompositeLF: Produce a composite serie from multiple charcoal records...

pfDiagnostic: Print diagnostic pdf for individual transformed series

pfDotMap: Produce maps of paleofire data

pfExtract: Extract charcoal data for a list of sites

pfGridding: Produce gridded maps of transformed charcoal values.

pfInteractive: GCD sites interactive selection

pfKruskal: Analyse composite records by a Kruskal-Wallis ANOVA

pfMinMax: MiniMax transformation of a charcoal serie

pfPublication: Get citations for charcoal sites

pfResolution: Calculates age resolution indicators for charcoal records

pfSimpleGrid: Produce simple gridded maps of paleofire data

pfSiteSel: GCD sites selection methods

pfToKml: Export selected site to Google Earth kml format

pfTransform: Transform charcoal data for unique to multiple series

plot.CHAR: Plot CHAR

plot.contiguous: Plot "contiguous" object

plot.kdffreq: plot.kdffreq

plot.pfCircular: plot.pfCircular

plot.pfComposite: plot.pfComposite

plot.pfCompositeLF: plot.pfCompositeLF

plot.pfGridding: Plot a "pfGridding" object.

plot.pfKruskal: Plot a "pfKruskal" object.

plot.pfSiteSel: plot.pfSiteSel

plot.potveg: plot.potveg

potveg: potveg

pretreatment: Calculate particules accumulation rates for sediment records

rbind.pfAddData: rbind.pfAddData

summary.pfSiteSel: summary.pfSiteSel

triCube: Tukey's Tricube weight function

Functions

bestLoess Man page
bootCI Man page
checkGCDversion Man page
coast Man page
contiguous Man page
contrib Man page
contrib.pfCompositeLF Man page
countries Man page
dem Man page
haverdist Man page
influx Man page
kdffreq Man page
loessGCV Man page
paleofire Man page
paleofire-internal Man page
paleofire-package Man page
pfAddData Man page
pfBoxCox Man page
pfCircular Man page
pfComposite Man page
pfCompositeLF Man page
pfDiagnostic Man page
pfDotMap Man page
pfExtract Man page
pfGridding Man page
pfInteractive Man page
pfKruskal Man page
pfMinMax Man page
pfPublication Man page
pfResolution Man page
pfSimpleGrid Man page
pfSiteSel Man page
pfToKml Man page
pfTransform Man page
plot.CHAR Man page
plot.contiguous Man page
plot.kdffreq Man page
plot.pfCircular Man page
plot.pfComposite Man page
plot.pfCompositeLF Man page
plot.pfGridding Man page
plot.pfKruskal Man page
plot.pfSiteSel Man page
plot.potveg Man page
potveg Man page
pretreatment Man page
rbind.pfAddData Man page
summary.pfSiteSel Man page
triCube Man page

Files

paleofire
paleofire/inst
paleofire/inst/COPYING
paleofire/inst/CITATION
paleofire/inst/THANKS
paleofire/inst/doc
paleofire/inst/doc/paleofire-paper.pdf
paleofire/inst/doc/paleofire-paper.Rnw
paleofire/inst/doc/paleofire-paper.R
paleofire/NAMESPACE
paleofire/demo
paleofire/demo/00Index
paleofire/demo/example-1.R
paleofire/NEWS
paleofire/data
paleofire/data/dem.rda
paleofire/data/datalist
paleofire/data/coast.rda
paleofire/data/countries.rda
paleofire/R
paleofire/R/pfCircular.R paleofire/R/pfKruskal.R paleofire/R/pretreatment.R paleofire/R/pfSiteSel.R paleofire/R/pfBoxCox.R paleofire/R/paleofire-package.R paleofire/R/pfToKml.R paleofire/R/pfResolution.R paleofire/R/potveg.R paleofire/R/pfPublication.R paleofire/R/contiguous.R paleofire/R/kdffreq.R paleofire/R/pfExtract.R
paleofire/R/pfDotMap.r
paleofire/R/pfComposite.R paleofire/R/pfMinMax.R paleofire/R/pfCompositeLF.R
paleofire/R/pfSimpleGrid.r
paleofire/R/pfTransform.R paleofire/R/pfDiagnostic.R paleofire/R/pfAddData.R paleofire/R/pfGridding.R paleofire/R/pfInteractive.R paleofire/R/zzz.R
paleofire/vignettes
paleofire/vignettes/paleofire-paper.bib
paleofire/vignettes/paleofire-paper.Rnw
paleofire/vignettes/paleofire-paper-fig3.pdf
paleofire/README.md
paleofire/MD5
paleofire/build
paleofire/build/vignette.rds
paleofire/DESCRIPTION
paleofire/man
paleofire/man/plot.pfGridding.Rd paleofire/man/triCube.Rd paleofire/man/pfPublication.Rd paleofire/man/pfMinMax.Rd paleofire/man/plot.pfSiteSel.Rd paleofire/man/potveg.Rd paleofire/man/pfSiteSel.Rd paleofire/man/plot.pfCompositeLF.Rd paleofire/man/coast.Rd paleofire/man/plot.contiguous.Rd paleofire/man/pfResolution.Rd paleofire/man/pfKruskal.Rd paleofire/man/plot.pfKruskal.Rd paleofire/man/pfInteractive.Rd paleofire/man/contiguous.Rd paleofire/man/plot.CHAR.Rd paleofire/man/pfExtract.Rd paleofire/man/paleofire-package.Rd paleofire/man/pfDotMap.Rd paleofire/man/contrib.pfCompositeLF.Rd paleofire/man/rbind.pfAddData.Rd paleofire/man/pfSimpleGrid.Rd paleofire/man/plot.potveg.Rd paleofire/man/checkGCDversion.Rd paleofire/man/pfCircular.Rd paleofire/man/kdffreq.Rd paleofire/man/pfTransform.Rd paleofire/man/pfCompositeLF.Rd paleofire/man/pfToKml.Rd paleofire/man/summary.pfSiteSel.Rd paleofire/man/plot.pfCircular.Rd paleofire/man/plot.pfComposite.Rd paleofire/man/pfGridding.Rd paleofire/man/plot.kdffreq.Rd paleofire/man/pfDiagnostic.Rd paleofire/man/pfComposite.Rd paleofire/man/pretreatment.Rd paleofire/man/pfAddData.Rd paleofire/man/paleofire-internal.Rd paleofire/man/pfBoxCox.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.