paleomorph: Geometric Morphometric Tools for Paleobiology
Version 0.1.4

Fill missing symmetrical data with mirroring, calculate Procrustes alignments with or without scaling, and compute standard or vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. Tolerates missing data for all analyses.

AuthorTim Lucas, Anjali Goswami
Date of publication2017-04-19 20:15:20 UTC
MaintainerTim Lucas <timcdlucas@gmail.com>
LicenseMIT + file LICENSE
Version0.1.4
URL https://github.com/timcdlucas/paleomorph/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("paleomorph")

Popular man pages

countMissing: Count the number of missing landmarks in an array
covar: Calculate covariance matrix between individual landmark...
dotcorr: Calculate 3D vector correlation matrix using the congruence...
dotcvm: Calculate 2d or 3D covariance matrix using unscaled...
mirrorfill: Fill missing symmetrical landmarks for all specimens in an...
plotSpecimens: Plot an array of specimen landmark data in an interactive 3D...
procrustes: Conducts Procrustes superimposition to align 3D shapes with...
See all...

All man pages Function index File listing

Man pages

countMissing: Count the number of missing landmarks in an array
covar: Calculate covariance matrix between individual landmark...
dotcorr: Calculate 3D vector correlation matrix using the congruence...
dotcvm: Calculate 2d or 3D covariance matrix using unscaled...
mirrorfill: Fill missing symmetrical landmarks for all specimens in an...
mirrorfill1: Fill missing landmarks for a single specimen using mirrored...
plotSpecimens: Plot an array of specimen landmark data in an interactive 3D...
procrustes: Conducts Procrustes superimposition to align 3D shapes with...

Functions

bestplane Source code
completeLandmarks Source code
countMissing Man page Source code
covar Man page Source code
deltaa Source code
dotcorr Man page Source code
dotcorrentry Source code
dotcvm Man page Source code
dotcvmentry Source code
largestev Source code
lcentroid Source code
lcentroid2 Source code
lnorm Source code
lrotate Source code
lscale Source code
lshift Source code
makePlaneParamsList Source code
midline Source code
mirrorfill Man page Source code
mirrorfill1 Man page Source code
pcistep Source code
pcrstep Source code
pcsstep Source code
pctstep Source code
plotSpecimens Man page Source code
procrustes Man page Source code
reflect Source code
rp_decompose Source code
scorea Source code
smallestev Source code
unzapa Source code
zapa Source code

Files

tests
tests/testthat
tests/testthat/testzapa.R
tests/testthat/testMirror.R
tests/testthat/testMatrixAlgebra.R
tests/testthat/testprocrustes.R
tests/testthat/testpcsstep.R
tests/testthat/testdeltaa.R
tests/testthat/testscorea.R
tests/testthat/testcvm.R
tests/testthat/testpcistep.R
tests/testthat/testpctstep.R
tests/testthat/testCountMissing.R
tests/testthat/testCommon.R
tests/testthat/testpcrstep.R
tests/test-all.R
NAMESPACE
R
R/utils.R
R/plotSpecimens.R
R/procrustes.R
R/common.R
R/cvm.R
R/mirror.R
MD5
DESCRIPTION
man
man/countMissing.Rd
man/plotSpecimens.Rd
man/mirrorfill.Rd
man/covar.Rd
man/dotcorr.Rd
man/mirrorfill1.Rd
man/procrustes.Rd
man/dotcvm.Rd
LICENSE
paleomorph documentation built on May 19, 2017, 10:49 p.m.

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