paleomorph: Geometric Morphometric Tools for Paleobiology

Fill missing symmetrical data with mirroring, calculate Procrustes alignments with or without scaling, and compute standard or vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. Tolerates missing data for all analyses.

Author
Tim Lucas, Anjali Goswami
Date of publication
2016-09-29 15:31:33
Maintainer
Tim Lucas <timcdlucas@gmail.com>
License
MIT + file LICENSE
Version
0.1.3
URLs

View on CRAN

Man pages

countMissing
Count the number of missing landmarks in an array
covar
Calculate covariance matrix between individual landmark...
dotcorr
Calculate 3D vector correlation matrix using the congruence...
dotcvm
Calculate 3D covariance matrix using unscaled congruence...
mirrorfill
Fill missing symmetrical landmarks for all specimens in an...
mirrorfill1
Fill missing landmarks for a single specimen using mirrored...
plotSpecimens
Plot an array of specimen landmark data in an interactive 3D...
procrustes
Conducts Procrustes superimposition to align 3D shapes with...

Files in this package

paleomorph
paleomorph/tests
paleomorph/tests/testthat
paleomorph/tests/testthat/testzapa.R
paleomorph/tests/testthat/testMirror.R
paleomorph/tests/testthat/testMatrixAlgebra.R
paleomorph/tests/testthat/testprocrustes.R
paleomorph/tests/testthat/testpcsstep.R
paleomorph/tests/testthat/testdeltaa.R
paleomorph/tests/testthat/testscorea.R
paleomorph/tests/testthat/testcvm.R
paleomorph/tests/testthat/testpcistep.R
paleomorph/tests/testthat/testpctstep.R
paleomorph/tests/testthat/testCountMissing.R
paleomorph/tests/testthat/testCommon.R
paleomorph/tests/testthat/testpcrstep.R
paleomorph/tests/test-all.R
paleomorph/NAMESPACE
paleomorph/R
paleomorph/R/utils.R
paleomorph/R/plotSpecimens.R
paleomorph/R/procrustes.R
paleomorph/R/common.R
paleomorph/R/cvm.R
paleomorph/R/mirror.R
paleomorph/MD5
paleomorph/DESCRIPTION
paleomorph/man
paleomorph/man/countMissing.Rd
paleomorph/man/plotSpecimens.Rd
paleomorph/man/mirrorfill.Rd
paleomorph/man/covar.Rd
paleomorph/man/dotcorr.Rd
paleomorph/man/mirrorfill1.Rd
paleomorph/man/procrustes.Rd
paleomorph/man/dotcvm.Rd
paleomorph/LICENSE