eilers_peeters_generate_regression_ETR_II: Eilers-Peeters Regression for ETR II

In pam: Fast and Efficient Processing of PAM Data

Eilers-Peeters Regression for ETR II

Description

Fits a regression model for ETR II based on Eilers-Peeters (1988), considering photoinhibition.

Usage

eilers_peeters_generate_regression_ETR_II(
  data,
  a_start_value = eilers_peeters_default_start_value_a,
  b_start_value = eilers_peeters_default_start_value_b,
  c_start_value = eilers_peeters_default_start_value_c
)

Arguments

data	A data.table from read_dual_pam_data.
a_start_value	Numeric. Starting value for a. Default: a_start_values_eilers_peeters_default.
b_start_value	Numeric. Starting value for b. Default: b_start_values_eilers_peeters_default.
c_start_value	Numeric. Starting value for c. Default: c_start_values_eilers_peeters_default.

Details

A detailed documentation can be found under https://github.com/biotoolbox/pam?tab=readme-ov-file#eilers_peeters_generate_regression_etr_i-and-eilers_peeters_generate_regression_etr_ii.

Value

A list containing:

• etr_regression_data: Predicted ETR values.

• sdiff: Deviation between actual and predicted values.

• a, b, c: Fitted parameters.

• pm: Maximum ETR (p_m).

• s: Initial slope (s).

• ik: Transition point from light limitation to light saturation (I_k).

• im: PAR at maximum ETR (I_m).

• w: Peak sharpness (w).

References

Eilers, P. H. C., & Peeters, J. C. H. (1988). A model for the relationship between light intensity and the rate of photosynthesis in phytoplankton. Ecological Modelling, 42(3-4), 199-215. Available at: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/0304-3800(88)90057-9")}

Examples

path <- file.path(system.file("extdata", package = "pam"), "20240925.csv")
data <- read_dual_pam_data(path)

result <- eilers_peeters_generate_regression_ETR_II(data)

pam documentation built on April 4, 2025, 2:12 a.m.