parallelize.dynamic: Automate parallelization of function calls by means of dynamic code analysis
Version 0.9-1

Passing a given function name or a call to the parallelize/parallelize_call functions analyses and executes the code, if possible in parallel. Parallel code execution can be performed locally or on remote batch queuing systems.

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AuthorStefan Boehringer <r-packages@s-boehringer.org>
Date of publication2013-05-22 20:25:33
MaintainerStefan Boehringer <r-packages@s-boehringer.org>
LicenseLGPL
Version0.9-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("parallelize.dynamic")

Man pages

Apply: Expose an apply-loop to parallelization
LapplyExecutionState-class: Class '"LapplyExecutionState"'
LapplyFreezer-class: Class '"LapplyFreezer"'
LapplyPersistentFreezer-class: Class '"LapplyPersistentFreezer"'
LapplyProbeState-class: Class '"LapplyProbeState"'
LapplyRunState-class: Class '"LapplyRunState"'
LapplyState-class: Class '"LapplyState"'
Log: Log a message to stderr.
parallelize: Subject a function to dynamic parallelization
ParallelizeBackend-class: Class '"ParallelizeBackend"'
ParallelizeBackendLocal-class: Class '"ParallelizeBackendLocal"'
ParallelizeBackendOGS-class: Class '"ParallelizeBackendOGS"'
ParallelizeBackendOGSremote-class: Class '"ParallelizeBackendOGSremote"'
ParallelizeBackendSnow-class: Class '"ParallelizeBackendSnow"'
parallelize.dynamic-package: Automate parallelization of function calls by means of...
parallelize_initialize: Initialize dynamic parallelization of ensuing parallelize...
parallelize_setEnable: Turn on/off the parallelization mechanism
readFile: Read content of file and return as character object.
tempcodefile: Create a temporary file that contains the function definition...

Functions

Apply Man page
Apply_backup Source code
Catch Source code
Df Source code
Df_ Source code
Dir.create Source code
Do.call Source code
File.copy Source code
File.exists Source code
File.remove Source code
File.symlink Source code
Lapply Man page
LapplyExecutionState-class Man page
LapplyFreezer-class Man page
LapplyPersistentFreezer-class Man page
LapplyProbeState-class Man page
LapplyRunState-class Man page
LapplyState-class Man page
Lapply_backup Source code
Lapply_do Source code
Lapply_error Source code
Lapply_error.as.character Source code
Lapply_getConfig Source code
Lapply_initialize Man page
Lapply_initializeState Source code
Lapply_initialze_probing Source code
Lapply_parallelize Source code
Lapply_probe Source code
Lapply_probeDepth Source code
Lapply_recoverState Source code
Lapply_run Source code
Lapply_setConfig Source code
List Source code
Load Source code
Log Man page Source code
Log.level Man page Source code
Log.setLevel Man page Source code
MC Source code
MR Source code
Merge Source code
OGSremoteFile Source code
OGSremoteWorkingDir Source code
ParallelizeBackend-class Man page
ParallelizeBackendLocal-class Man page
ParallelizeBackendOGS-class Man page
ParallelizeBackendOGSremote-class Man page
ParallelizeBackendSnow-class Man page
RdocumentationForClasses Source code
RdocumentationForFunctions Source code
RdocumentationForMethods Source code
RdocumentationForObjects Source code
RdocumentationSkeleton Source code
Sapply Man page
Sapply_backup Source code
Save Source code
Source Source code
System Source code
System.SetDoLogOnly Source code
System.wait Source code
Throw Source code
Try Source code
Union Source code
Which.max Source code
applyPermutation Source code
asc Source code
assign.list Source code
avu Source code
be.numeric Source code
benchmark.timed Source code
callEvalArgs Source code
callWithArgs Source code
callWithFunctionArgs Source code
catVector Source code
catVectorAsLine Source code
cbindDataFrames Source code
character.as.characters Source code
clapply Source code
clapply_cluster Source code
coefficientNamesForData Source code
col.frame Source code
con Source code
count Source code
count2blocks Source code
counts2idcs Source code
covariatePairs Source code
cumpartition Source code
data.frame.types Source code
data.frame.union Source code
dataExpandFactors Source code
dataExpandedNames Source code
defined Source code
defined.by.name Source code
df Source code
df.reorder Source code
dfm Source code
dfns Source code
dfrm Source code
dfrmr Source code
dirList Source code
do.call Source code
encapsulateCall Source code
environment.copy Source code
eval.text Source code
evalCall Source code
evaluateArgs Source code
exists.pos Source code
expand.block Source code
expandBlocks Source code
fetchRegexpr Source code
file.locate Source code
fileName Source code
finalizeParallelization Man page
finalizeParallelization,ParallelizeBackend-method Man page
finalizeParallelization,ParallelizeBackendOGS-method Man page
firstDef Source code
firstDefNA Source code
fn Source code
fn.popPrefix Source code
fn.pushPrefix Source code
fn.set Source code
formula.covariates Source code
formula.nullModel Source code
formula.re Source code
formula.response Source code
formula.rhs Source code
formula.to.character Source code
formula.vars Source code
formulaWith Source code
fprint Source code
fraction Source code
freezeCall Source code
freezeCallEncapsulated Source code
freezeCallOGS Source code
frozenCallResults Source code
frozenCallWrap Source code
gapply Source code
getCommandOptions Source code
getPatternFromFiles Source code
getPatternFromStrings Source code
getResult Man page
getResult,ParallelizeBackend-method Man page
getResult,ParallelizeBackendOGSremote-method Man page
grep.infixes Source code
grep.vector Source code
handleTriggers Source code
hex2int Source code
hex2ints Source code
initScheduling Man page
initScheduling,ParallelizeBackend-method Man page
initScheduling,ParallelizeBackendOGS-method Man page
initScheduling,ParallelizeBackendOGSremote-method Man page
initialize Man page
initialize,ParallelizeBackend-method Man page
initialize,ParallelizeBackendLocal-method Man page
initialize,ParallelizeBackendOGS-method Man page
initialize,ParallelizeBackendOGSremote-method Man page
initialize,ParallelizeBackendSnow-method Man page
instantiate.list Source code
inverse Source code
ipAddress Source code
is.ascending Source code
is.in Source code
is.sorted Source code
isSynchroneous Man page
isSynchroneous,ParallelizeBackend-method Man page
ist Source code
iterateModels Source code
iterateModelsExpand Source code
iterateModels_old Source code
join Source code
lapply_dispatch Man page
lapply_dispatch,ParallelizeBackend-method Man page
lapply_dispatchFinalize Man page
lapply_dispatchFinalize,ParallelizeBackend-method Man page
lapply_dispatchFinalize,ParallelizeBackendLocal-method Man page
lapply_dispatchFinalize,ParallelizeBackendOGS-method Man page
lapply_dispatchFinalize,ParallelizeBackendOGSremote-method Man page
lapply_dispatchFinalize,ParallelizeBackendSnow-method Man page
lapply_results Man page
lapply_results,ParallelizeBackend-method Man page
list.copy Source code
list.key Source code
list.keys Source code
list.kp Source code
list.kpr Source code
list.kprw Source code
list.min Source code
list.to.df Source code
list.with.names Source code
list2df Source code
list2df.print Source code
listInverse Source code
listKeyValue Source code
listOfDataFrames2data.frame Source code
listOfLists2data.frame Source code
lists.splice Source code
lrbind Source code
mat.sel Source code
md5sumString Source code
meanList Source code
meanMatrices Source code
meanStructure Source code
meanVectors Source code
merge.lists Source code
merge.lists.takenFrom Source code
merge.multi Source code
merge.multi.dfs Source code
merge.multi.list Source code
merge.multi.list.symbolic Source code
mergeDictToDict Source code
mergeDictToString Source code
mergeDictToVector Source code
meshVectors Source code
nif Source code
nit Source code
niz Source code
nlapply Source code
object.copy Source code
objectsFromCodeFiles Source code
onLoad Source code
order.df Source code
order.df.maps Source code
pad Source code
parallelizationStatePath Source code
parallelizationStepOGS Source code
parallelize Man page
parallelize.dynamic Man page
parallelize.dynamic-package Man page
parallelizeOfflineStep Source code
parallelizeStep Source code
parallelize_backend Man page
parallelize_backend,ParallelizeBackend-method Man page
parallelize_call Man page
parallelize_call_dummy Source code
parallelize_dummy Source code
parallelize_initialize Man page
parallelize_initializeBackendWithCall Source code
parallelize_internal Source code
parallelize_setEnable Man page Source code
pastem Source code
performParallelizationStep Man page
performParallelizationStep,ParallelizeBackend-method Man page
performParallelizationStep,ParallelizeBackendOGSremote-method Man page
pollJids Source code
pollMessage Source code
pollMessageRaw Source code
pollParallelization Man page
pollParallelization,ParallelizeBackend-method Man page
pollParallelization,ParallelizeBackendOGS-method Man page
pollParallelization,ParallelizeBackendOGSremote-method Man page
printf Source code
progressStat Source code
progressString Source code
qs Source code
quoteString Source code
r.output.to.vector.int Source code
r.output.to.vector.numeric Source code
rbind.list2df Source code
rbindDataFrames Source code
reDoc Source code
readFile Man page Source code Source code
readTable Source code
readTable.RData Source code
readTable.csv Source code
readTable.sav Source code
remoteConfigForOGSremote Source code
rep.each Source code
rep.each.row Source code
rep.list Source code
reshape.long Source code
reshape.wide Source code
restoreParallelizationState Man page
restoreParallelizationState,ParallelizeBackend-method Man page
restoreParallelizationState,ParallelizeBackendOGS-method Man page
restoreParallelizationStatePath Source code
rget Source code
sapplyId Source code
sapplyn Source code
saveParallelizationState Man page
saveParallelizationState,ParallelizeBackend-method Man page
saveParallelizationStatePath Source code
say Source code
scheduleNextParallelization Man page
scheduleNextParallelization,ParallelizeBackend-method Man page
scheduleNextParallelization,ParallelizeBackendOGS-method Man page
search.block Source code
searchDataFrame Source code
set.card Source code
specifyCluster Source code
splitExtendedPath Source code
splitListEls Source code
splitListIndcs Source code
splitPath Source code
splitSeatsForFractions Source code
splitString Source code
sub.graph Source code
sub.graph.merge Source code
subData Source code
subDataFromFormula Source code
swigIt Source code
table.n Source code
tempFileName Source code
tempcodefile Man page Source code
thawCall Source code
to.col Source code
to.list Source code
to.numeric Source code
unlist.n Source code
variableIndecesForData Source code
variablesForData Source code
vector.replace Source code
vector.with.names Source code
which.indeces Source code
which.row Source code
write.csvs Source code
writeFile Source code
writeRdocumentationToDir Source code

Files

MD5
inst
inst/Perl
inst/Perl/TempFileNames.pm
inst/Perl/Set.pm
inst/Perl/qsub.pl
inst/Rscripts
inst/Rscripts/Rparallel_functions_std.R
inst/Rscripts/Rparallel_functions_parallel.R
DESCRIPTION
R
R/Rdata.R
R/parallelize.dynamic.R
R/Rparallel.R
R/Rparallel_setEnable_pkg.R
R/Rfunctions.R
R/Rparallel.back.R
R/Rsystem.R
NAMESPACE
man
man/parallelize_setEnable.Rd
man/ParallelizeBackendOGSremote-class.Rd
man/Apply.Rd
man/tempcodefile.Rd
man/LapplyPersistentFreezer-class.Rd
man/LapplyFreezer-class.Rd
man/parallelize_initialize.Rd
man/ParallelizeBackendSnow-class.Rd
man/LapplyRunState-class.Rd
man/LapplyExecutionState-class.Rd
man/readFile.Rd
man/LapplyProbeState-class.Rd
man/ParallelizeBackendLocal-class.Rd
man/ParallelizeBackendOGS-class.Rd
man/LapplyState-class.Rd
man/Log.Rd
man/ParallelizeBackend-class.Rd
man/parallelize.dynamic-package.Rd
man/parallelize.Rd
parallelize.dynamic documentation built on May 19, 2017, 2:48 p.m.