pbdDEMO: Programming with Big Data -- Demonstrations and Examples Using 'pbdR' Packages

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A set of demos of 'pbdR' packages, together with a useful, unifying vignette.

Author
Drew Schmidt [aut, cre], Wei-Chen Chen [aut], George Ostrouchov [aut], Pragneshkumar Patel [aut]
Date of publication
2016-10-25 23:31:25
Maintainer
Drew Schmidt <schmidt@math.utk.edu>
License
Mozilla Public License 2.0
Version
0.3-1
URLs

View on CRAN

Man pages

gbd_dmat
GBD Matrix to Distributed Dense Matrix and vice versa
load_balance
Load Balancing a Dataset
mpi_example
MPI Demonstrations
ncvar
Read and Write Parallel NetCDF4 Files in GBD and ddmatrix...
pbdDEMO-package
Demonstrations and Examples for the pbd Project
plot_dmat
Visualizing the DMAT Data Structure
read.csv.ddmatrix
A Simple Parallel CSV Reader
Temperature-at-Reference-Height
Surface Air Temperature at Reference Height (TREFHT)
timer
A Timing Function for SPMD Routines
verify
Distributed Linear Algebra Verification

Files in this package

pbdDEMO
pbdDEMO/inst
pbdDEMO/inst/CITATION
pbdDEMO/inst/extra
pbdDEMO/inst/extra/data
pbdDEMO/inst/extra/data/x.csv
pbdDEMO/inst/extra/data/x.nc
pbdDEMO/inst/Benchmarks
pbdDEMO/inst/Benchmarks/lmfit.r
pbdDEMO/inst/Benchmarks/pca.r
pbdDEMO/inst/Benchmarks/cov.r
pbdDEMO/inst/doc
pbdDEMO/inst/doc/pbdDEMO-guide.Rnw
pbdDEMO/inst/doc/pbdDEMO-guide.pdf
pbdDEMO/src
pbdDEMO/src/wc.c
pbdDEMO/NAMESPACE
pbdDEMO/demo
pbdDEMO/demo/gbd_dmat.r
pbdDEMO/demo/phyclust_bootstrap.r
pbdDEMO/demo/mcmc_galaxy.r
pbdDEMO/demo/nc4_serial.r
pbdDEMO/demo/iris_dmat.r
pbdDEMO/demo/sample_stat.r
pbdDEMO/demo/nc4_gbdc.r
pbdDEMO/demo/trefht.r
pbdDEMO/demo/balance.r
pbdDEMO/demo/comparators.r
pbdDEMO/demo/nc4_parallel.r
pbdDEMO/demo/nc4_dmat.r
pbdDEMO/demo/iris_overlap.r
pbdDEMO/demo/quantile.r
pbdDEMO/demo/iris_serial.r
pbdDEMO/demo/randmat_diag_global.r
pbdDEMO/demo/nc4_par_read_2d.r
pbdDEMO/demo/nc4_par_write_1d.r
pbdDEMO/demo/randmat_global.r
pbdDEMO/demo/pca.r
pbdDEMO/demo/iris_gbd.r
pbdDEMO/demo/reblock.r
pbdDEMO/demo/dist_iris.r
pbdDEMO/demo/verify.r
pbdDEMO/demo/00Index
pbdDEMO/demo/dist_pony.r
pbdDEMO/demo/ols.r
pbdDEMO/demo/read_ncdf.r
pbdDEMO/demo/randmat_local.r
pbdDEMO/demo/sample_stat_dmat.r
pbdDEMO/demo/nc4_par_read_1d.r
pbdDEMO/demo/nc4_par_write_2d.r
pbdDEMO/demo/mcmc_rjags.r
pbdDEMO/demo/monte_carlo.r
pbdDEMO/demo/binning.r
pbdDEMO/demo/read_csv.r
pbdDEMO/demo/ols_dmat.r
pbdDEMO/data
pbdDEMO/data/datalist
pbdDEMO/data/TREFHT.rda
pbdDEMO/R
pbdDEMO/R/gbd_dmat.r
pbdDEMO/R/load_balance.r
pbdDEMO/R/treft.r
pbdDEMO/R/pbdDEMO-package.r
pbdDEMO/R/ncvar_2d.r
pbdDEMO/R/verify.R
pbdDEMO/R/mpi_example.r
pbdDEMO/R/timer.R
pbdDEMO/R/zzz.R
pbdDEMO/R/read_csv.r
pbdDEMO/R/plot_dmat.r
pbdDEMO/vignettes
pbdDEMO/vignettes/pbdDEMO-include
pbdDEMO/vignettes/pbdDEMO-include/08-dmat_stats.tex
pbdDEMO/vignettes/pbdDEMO-include/preamble.tex
pbdDEMO/vignettes/pbdDEMO-include/applications
pbdDEMO/vignettes/pbdDEMO-include/applications/a3-phyclust.tex
pbdDEMO/vignettes/pbdDEMO-include/applications/a2-pmclust.tex
pbdDEMO/vignettes/pbdDEMO-include/applications/a1-logL.tex
pbdDEMO/vignettes/pbdDEMO-include/applications/c1-tbd.tex
pbdDEMO/vignettes/pbdDEMO-include/applications/a5-pairwise.tex
pbdDEMO/vignettes/pbdDEMO-include/applications/a4-Bayes.tex
pbdDEMO/vignettes/pbdDEMO-include/applications/b1-ts.tex
pbdDEMO/vignettes/pbdDEMO-include/frontmatter
pbdDEMO/vignettes/pbdDEMO-include/frontmatter/00-foreword.tex
pbdDEMO/vignettes/pbdDEMO-include/frontmatter/00-covernote.tex
pbdDEMO/vignettes/pbdDEMO-include/frontmatter/00-acknowledgement.tex
pbdDEMO/vignettes/pbdDEMO-include/frontmatter/00-copyright.tex
pbdDEMO/vignettes/pbdDEMO-include/frontmatter/00-preface.tex
pbdDEMO/vignettes/pbdDEMO-include/frontmatter/00-warn.tex
pbdDEMO/vignettes/pbdDEMO-include/appendix.tex
pbdDEMO/vignettes/pbdDEMO-include/style.tex
pbdDEMO/vignettes/pbdDEMO-include/04-statistics.tex
pbdDEMO/vignettes/pbdDEMO-include/11-redist.tex
pbdDEMO/vignettes/pbdDEMO-include/01-introduction.tex
pbdDEMO/vignettes/pbdDEMO-include/titlepage.tex
pbdDEMO/vignettes/pbdDEMO-include/sidelabels.tex
pbdDEMO/vignettes/pbdDEMO-include/pbdDEMO.bib
pbdDEMO/vignettes/pbdDEMO-include/03-mpi.tex
pbdDEMO/vignettes/pbdDEMO-include/pics
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_cyclic.PNG
pbdDEMO/vignettes/pbdDEMO-include/pics/galaxy_1.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/dist_iris.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/block.png
pbdDEMO/vignettes/pbdDEMO-include/pics/rowblock.png
pbdDEMO/vignettes/pbdDEMO-include/pics/parallelism_task.PNG
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_cyclic2d.PNG
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_block.PNG
pbdDEMO/vignettes/pbdDEMO-include/pics/trefht.jpg
pbdDEMO/vignettes/pbdDEMO-include/pics/cov.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_blockcyclic.PNG
pbdDEMO/vignettes/pbdDEMO-include/pics/iris_pairs.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/Phylogeny_of_Retroviruses.png
pbdDEMO/vignettes/pbdDEMO-include/pics/serial_plot.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/rowcyclic.png
pbdDEMO/vignettes/pbdDEMO-include/pics/colblock.png
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_plot.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_blockcyclic2d.png
pbdDEMO/vignettes/pbdDEMO-include/pics/galaxy_rjags.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/dmat_block2d.png
pbdDEMO/vignettes/pbdDEMO-include/pics/dist_pony.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/pbdR.png
pbdDEMO/vignettes/pbdDEMO-include/pics/gbd_plot.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/uch_small.png
pbdDEMO/vignettes/pbdDEMO-include/pics/pony524.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/pbdR-packages.png
pbdDEMO/vignettes/pbdDEMO-include/pics/galaxy_mcmc.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/parallelism_data.PNG
pbdDEMO/vignettes/pbdDEMO-include/pics/bc.png
pbdDEMO/vignettes/pbdDEMO-include/pics/misleading.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/galaxy_2.pdf
pbdDEMO/vignettes/pbdDEMO-include/pics/libs.png
pbdDEMO/vignettes/pbdDEMO-include/pics/colcyclic.png
pbdDEMO/vignettes/pbdDEMO-include/10-pbdNCDF4.tex
pbdDEMO/vignettes/pbdDEMO-include/06-gen.tex
pbdDEMO/vignettes/pbdDEMO-include/09-reading.tex
pbdDEMO/vignettes/pbdDEMO-include/05-dmat.tex
pbdDEMO/vignettes/pbdDEMO-include/02-background.tex
pbdDEMO/vignettes/pbdDEMO-include/07-dmat_basic.tex
pbdDEMO/vignettes/cover
pbdDEMO/vignettes/cover/cover_2.tex
pbdDEMO/vignettes/cover/join2.png
pbdDEMO/vignettes/cover/cover.tex
pbdDEMO/vignettes/cover/cover.pdf
pbdDEMO/vignettes/cover/build_cover.sh
pbdDEMO/vignettes/cover/cover_3.tex
pbdDEMO/vignettes/pbdDEMO-guide.Rnw
pbdDEMO/vignettes/build_pdf.sh
pbdDEMO/README.md
pbdDEMO/MD5
pbdDEMO/DESCRIPTION
pbdDEMO/ChangeLog
pbdDEMO/man
pbdDEMO/man/timer.Rd
pbdDEMO/man/pbdDEMO-package.Rd
pbdDEMO/man/read.csv.ddmatrix.Rd
pbdDEMO/man/gbd_dmat.Rd
pbdDEMO/man/load_balance.Rd
pbdDEMO/man/ncvar.Rd
pbdDEMO/man/mpi_example.Rd
pbdDEMO/man/Temperature-at-Reference-Height.Rd
pbdDEMO/man/verify.Rd
pbdDEMO/man/plot_dmat.Rd
pbdDEMO/cleanup