pbdDEMO: Programming with Big Data -- Demonstrations and Examples Using 'pbdR' Packages
Version 0.3-1

A set of demos of 'pbdR' packages, together with a useful, unifying vignette.

AuthorDrew Schmidt [aut, cre], Wei-Chen Chen [aut], George Ostrouchov [aut], Pragneshkumar Patel [aut]
Date of publication2016-10-25 23:31:25
MaintainerDrew Schmidt <schmidt@math.utk.edu>
LicenseMozilla Public License 2.0
Version0.3-1
URL http://r-pbd.org/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pbdDEMO")

Getting started

Package overview
README.md

Popular man pages

gbd_dmat: GBD Matrix to Distributed Dense Matrix and vice versa
pbdDEMO-package: Demonstrations and Examples for the pbd Project
plot_dmat: Visualizing the DMAT Data Structure
read.csv.ddmatrix: A Simple Parallel CSV Reader
Temperature-at-Reference-Height: Surface Air Temperature at Reference Height (TREFHT)
timer: A Timing Function for SPMD Routines
verify: Distributed Linear Algebra Verification
See all...

All man pages Function index File listing

Man pages

gbd_dmat: GBD Matrix to Distributed Dense Matrix and vice versa
load_balance: Load Balancing a Dataset
mpi_example: MPI Demonstrations
ncvar: Read and Write Parallel NetCDF4 Files in GBD and ddmatrix...
pbdDEMO-package: Demonstrations and Examples for the pbd Project
plot_dmat: Visualizing the DMAT Data Structure
read.csv.ddmatrix: A Simple Parallel CSV Reader
Temperature-at-Reference-Height: Surface Air Temperature at Reference Height (TREFHT)
timer: A Timing Function for SPMD Routines
verify: Distributed Linear Algebra Verification

Functions

Files

inst
inst/CITATION
inst/extra
inst/extra/data
inst/extra/data/x.csv
inst/extra/data/x.nc
inst/Benchmarks
inst/Benchmarks/lmfit.r
inst/Benchmarks/pca.r
inst/Benchmarks/cov.r
inst/doc
inst/doc/pbdDEMO-guide.Rnw
inst/doc/pbdDEMO-guide.pdf
src
src/wc.c
NAMESPACE
demo
demo/gbd_dmat.r
demo/phyclust_bootstrap.r
demo/mcmc_galaxy.r
demo/nc4_serial.r
demo/iris_dmat.r
demo/sample_stat.r
demo/nc4_gbdc.r
demo/trefht.r
demo/balance.r
demo/comparators.r
demo/nc4_parallel.r
demo/nc4_dmat.r
demo/iris_overlap.r
demo/quantile.r
demo/iris_serial.r
demo/randmat_diag_global.r
demo/nc4_par_read_2d.r
demo/nc4_par_write_1d.r
demo/randmat_global.r
demo/pca.r
demo/iris_gbd.r
demo/reblock.r
demo/dist_iris.r
demo/verify.r
demo/00Index
demo/dist_pony.r
demo/ols.r
demo/read_ncdf.r
demo/randmat_local.r
demo/sample_stat_dmat.r
demo/nc4_par_read_1d.r
demo/nc4_par_write_2d.r
demo/mcmc_rjags.r
demo/monte_carlo.r
demo/binning.r
demo/read_csv.r
demo/ols_dmat.r
data
data/datalist
data/TREFHT.rda
R
R/gbd_dmat.r
R/load_balance.r
R/treft.r
R/pbdDEMO-package.r
R/ncvar_2d.r
R/verify.R
R/mpi_example.r
R/timer.R
R/zzz.R
R/read_csv.r
R/plot_dmat.r
vignettes
vignettes/pbdDEMO-include
vignettes/pbdDEMO-include/08-dmat_stats.tex
vignettes/pbdDEMO-include/preamble.tex
vignettes/pbdDEMO-include/applications
vignettes/pbdDEMO-include/applications/a3-phyclust.tex
vignettes/pbdDEMO-include/applications/a2-pmclust.tex
vignettes/pbdDEMO-include/applications/a1-logL.tex
vignettes/pbdDEMO-include/applications/c1-tbd.tex
vignettes/pbdDEMO-include/applications/a5-pairwise.tex
vignettes/pbdDEMO-include/applications/a4-Bayes.tex
vignettes/pbdDEMO-include/applications/b1-ts.tex
vignettes/pbdDEMO-include/frontmatter
vignettes/pbdDEMO-include/frontmatter/00-foreword.tex
vignettes/pbdDEMO-include/frontmatter/00-covernote.tex
vignettes/pbdDEMO-include/frontmatter/00-acknowledgement.tex
vignettes/pbdDEMO-include/frontmatter/00-copyright.tex
vignettes/pbdDEMO-include/frontmatter/00-preface.tex
vignettes/pbdDEMO-include/frontmatter/00-warn.tex
vignettes/pbdDEMO-include/appendix.tex
vignettes/pbdDEMO-include/style.tex
vignettes/pbdDEMO-include/04-statistics.tex
vignettes/pbdDEMO-include/11-redist.tex
vignettes/pbdDEMO-include/01-introduction.tex
vignettes/pbdDEMO-include/titlepage.tex
vignettes/pbdDEMO-include/sidelabels.tex
vignettes/pbdDEMO-include/pbdDEMO.bib
vignettes/pbdDEMO-include/03-mpi.tex
vignettes/pbdDEMO-include/pics
vignettes/pbdDEMO-include/pics/dmat_cyclic.PNG
vignettes/pbdDEMO-include/pics/galaxy_1.pdf
vignettes/pbdDEMO-include/pics/dist_iris.pdf
vignettes/pbdDEMO-include/pics/block.png
vignettes/pbdDEMO-include/pics/rowblock.png
vignettes/pbdDEMO-include/pics/parallelism_task.PNG
vignettes/pbdDEMO-include/pics/dmat_cyclic2d.PNG
vignettes/pbdDEMO-include/pics/dmat_block.PNG
vignettes/pbdDEMO-include/pics/trefht.jpg
vignettes/pbdDEMO-include/pics/cov.pdf
vignettes/pbdDEMO-include/pics/dmat_blockcyclic.PNG
vignettes/pbdDEMO-include/pics/iris_pairs.pdf
vignettes/pbdDEMO-include/pics/Phylogeny_of_Retroviruses.png
vignettes/pbdDEMO-include/pics/serial_plot.pdf
vignettes/pbdDEMO-include/pics/rowcyclic.png
vignettes/pbdDEMO-include/pics/colblock.png
vignettes/pbdDEMO-include/pics/dmat_plot.pdf
vignettes/pbdDEMO-include/pics/dmat_blockcyclic2d.png
vignettes/pbdDEMO-include/pics/galaxy_rjags.pdf
vignettes/pbdDEMO-include/pics/dmat_block2d.png
vignettes/pbdDEMO-include/pics/dist_pony.pdf
vignettes/pbdDEMO-include/pics/pbdR.png
vignettes/pbdDEMO-include/pics/gbd_plot.pdf
vignettes/pbdDEMO-include/pics/uch_small.png
vignettes/pbdDEMO-include/pics/pony524.pdf
vignettes/pbdDEMO-include/pics/pbdR-packages.png
vignettes/pbdDEMO-include/pics/galaxy_mcmc.pdf
vignettes/pbdDEMO-include/pics/parallelism_data.PNG
vignettes/pbdDEMO-include/pics/bc.png
vignettes/pbdDEMO-include/pics/misleading.pdf
vignettes/pbdDEMO-include/pics/galaxy_2.pdf
vignettes/pbdDEMO-include/pics/libs.png
vignettes/pbdDEMO-include/pics/colcyclic.png
vignettes/pbdDEMO-include/10-pbdNCDF4.tex
vignettes/pbdDEMO-include/06-gen.tex
vignettes/pbdDEMO-include/09-reading.tex
vignettes/pbdDEMO-include/05-dmat.tex
vignettes/pbdDEMO-include/02-background.tex
vignettes/pbdDEMO-include/07-dmat_basic.tex
vignettes/cover
vignettes/cover/cover_2.tex
vignettes/cover/join2.png
vignettes/cover/cover.tex
vignettes/cover/cover.pdf
vignettes/cover/build_cover.sh
vignettes/cover/cover_3.tex
vignettes/pbdDEMO-guide.Rnw
vignettes/build_pdf.sh
README.md
MD5
DESCRIPTION
ChangeLog
man
man/timer.Rd
man/pbdDEMO-package.Rd
man/read.csv.ddmatrix.Rd
man/gbd_dmat.Rd
man/load_balance.Rd
man/ncvar.Rd
man/mpi_example.Rd
man/Temperature-at-Reference-Height.Rd
man/verify.Rd
man/plot_dmat.Rd
cleanup
pbdDEMO documentation built on May 20, 2017, 4:42 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.