Man pages for pcutils
Some Useful Functions for Statistics and Visualization
| add_alpha | Add alpha for a Rcolor |
| add_analysis | Add an analysis for a project |
| add_theme | Add a global gg_theme and colors for plots |
| change_fac_lev | Change factor levels |
| china_map | Plot china map |
| copy_df | Copy a data.frame |
| copy_vector | Copy a vector |
| count2 | Like 'uniq -c' in shell to count a vector |
| dabiao | Print some message with = |
| del_ps | Detach packages |
| df2distance | Convert Three-column Data to Distance Matrix |
| df2link | df to link table |
| download2 | Download File |
| download_ncbi_genome_file | Download genome files from NCBI based on accession number |
| explode | Explode a data.frame if there are split charter in one column |
| fittest | Fit a distribution |
| generate_labels | Generate labels position |
| get_cols | Get n colors |
| gghist | gg histogram |
| gghuan | Plot a doughnut chart |
| gghuan2 | gghuan2 for multi-doughnut chart |
| ggmosaic | ggmosaic for mosaic plot |
| ggplot_lim | Get a ggplot xlim and ylim |
| ggplot_translator | Translate axis label of a ggplot |
| grepl.data.frame | Grepl applied on a data.frame |
| group_box | Plot a boxplot |
| group_test | Performs multiple mean comparisons for a data.frame |
| gsub.data.frame | Gsub applied on a data.frame |
| guolv | Filter your data |
| hebing | Group your data |
| how_to_set_font_for_plot | How to set font for ggplot |
| how_to_set_options | How to set options in a package |
| how_to_update_parameters | How to update parameters |
| how_to_use_parallel | How to use parallel |
| how_to_use_sbatch | How to use sbatch |
| is.ggplot.color | Judge if a characteristic is Rcolor |
| legend_size | Scale a legend size |
| lib_ps | Attach packages or install packages have not benn installed |
| little_guodong | My cat |
| lm_coefficients | Get coefficients of linear regression model |
| make_gitbook | Make a Gitbook using bookdown |
| make_project | Make a R-analysis project |
| match_df | Match otutab and metadata |
| metadata | test data for pcutils package |
| mmscale | Min_Max scale |
| multireg | Multiple regression/ variance decomposition analysis |
| multitest | Multi-groups test |
| my_cat | Show my little cat named Guo Dong which drawn by my... |
| my_circle_packing | My Circle packing plot |
| my_circo | My circo plot |
| my_lm | Fit a linear model and plot |
| my_sunburst | My Sunburst plot |
| my_treemap | My Treemap plot |
| my_voronoi_treemap | My Voronoi treemap plot |
| otutab | test data for pcutils package |
| pcutils-package | pcutils: Some Useful Functions for Statistics and... |
| pipe | Pipe operator |
| plot.coefficients | Plot coefficients as a bar chart or lollipop chart |
| plotgif | Plot a gif |
| plotpdf | Plot a multi-pages pdf |
| pre_number_str | Prepare a numeric string |
| prepare_package | Prepare a package |
| read_fasta | Read fasta file |
| read.file | Read some special format file |
| remove.outliers | Remove outliers |
| rgb2code | Transform a rgb vector to a Rcolor code |
| rm_low | Remove the low relative items in each column |
| sample_map | Plot the sampling map |
| sanxian | Three-line table |
| scale_color_pc | Scale a fill color |
| scale_fill_pc | Scale a fill color |
| search_browse | Search and browse the web for specified terms |
| set_pcutils_config | Set config |
| show_pcutils_config | Show config |
| split_text | Split text into parts, each not exceeding a specified... |
| squash | Squash one column in a data.frame using other columns as id. |
| stackplot | Plot a stack plot |
| strsplit2 | Split Composite Names |
| t2 | Transpose data.frame |
| taxonomy | test data for pcutils package |
| tax_pie | Pie plot |
| tidai | Replace a vector by named vector |
| trans | Trans format your data |
| trans_format | Transfer the format of file |
| translator | Translator |
| twotest | Two-group test |
| update_NEWS_md | Update the NEW.md for a package |
| update_param | Update the parameters |
| venn | Plot a general venn (upset, flower) |
| write_fasta | Write a data.frame to fasta |
