pdc: Permutation Distribution Clustering
Version 1.0.3

Permutation Distribution Clustering is a clustering method for time series. Dissimilarity of time series is formalized as the divergence between their permutation distributions. The permutation distribution was proposed as measure of the complexity of a time series.

AuthorAndreas M. Brandmaier
Date of publication2015-09-28 17:02:34
MaintainerAndreas M. Brandmaier <brandmaier@mpib-berlin.mpg.de>
LicenseGPL (>= 3)
Version1.0.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pdc")

Getting started

Package overview

Popular man pages

distance: Codebook Dissimliarities
entropy.heuristic: Minimum Entropy Heuristic (MinE)
mds.plot: Multidimensional Scaling Plot
pdc.dist: Permutation Distribution Clustering Distance Matrix
pdclust: Permutation Distribution Clustering
pdc-package: Permutation Distribution Clustering
rasterPlot: Dendrogram Plot with Images
See all...

All man pages Function index File listing

Man pages

codebook: Codebook
complex.shapes: Shape Signatures of Fish, Glasses, and Bottles
distance: Codebook Dissimliarities
entropy.heuristic: Minimum Entropy Heuristic (MinE)
loo1nn: Leave-one-out One-nearest-neighbor Evaluation
mds.plot: Multidimensional Scaling Plot
pdc.dist: Permutation Distribution Clustering Distance Matrix
pdclust: Permutation Distribution Clustering
pdc-package: Permutation Distribution Clustering
rasterPlot: Dendrogram Plot with Images
star.shapes: Shape Signatures of Stars
trace.image: Shape Tracing of an Image

Functions

alpha.divergence Source code
alphaDivergence Source code
codebook Man page Source code
codebook.entropy Source code
codeword Source code
complex.shapes Man page
complex.shapes.raw Man page
convert.image Man page Source code
convert.matrix Source code
convert.matrix.multichannel Source code
convertImage Man page Source code
convertMatrix Source code
convertMatrixMultichannel Source code
divergenceMatrix Source code
divergenceMatrixMultichannel Source code
divergencematrix Source code
divergencematrix.multichannel Source code
entropy Source code
entropy.heuristic Man page Source code
entropyHeuristic Man page Source code
hellinger.distance Man page Source code
hellingerDistance Man page Source code
llr Source code
loo1nn Man page Source code
mds.plot Man page Source code
mdsPlot Man page Source code
pdc Man page
pdc-package Man page
pdc.dist Man page Source code
pdcDist Man page Source code
pdclust Man page Source code
plot.add.pvalues Source code
plot.mine Man page Source code
plot.pdclust Man page Source code
print.mine Man page Source code
print.pdclust Man page Source code
print.summary.mine Source code
ptext Source code
rasterPlot Man page Source code
squared.hellinger.distance Man page Source code
squaredHellingerDistance Man page Source code
star.shapes Man page
star.shapes.raw Man page
str.pdclust Man page Source code
summary.mine Man page Source code
sw Source code
symmetric.alpha.divergence Man page Source code
symmetricAlphaDivergence Man page Source code
test.clusters Source code
trace.image Man page Source code
traceImage Man page Source code

Files

inst
inst/CITATION
tests
tests/pdclust.R
tests/pdcdist.R
tests/codebook.R
tests/mine.R
src
src/fast_codebook6.c
src/fast_codebook4.c
src/fast_codebook3.c
src/fast_codebook2.c
src/fast_codebook5.c
src/fast_codebook7.c
src/fast_codebook0.c
NAMESPACE
NEWS
data
data/complex.shapes.rda
data/star.shapes.raw.rda
data/complex.shapes.raw.rda
data/star.shapes.rda
R
R/entropy.R
R/plot.mine.R
R/plot.pdclust.R
R/pdclust.R
R/convertImage.R
R/codeword.R
R/codebook.entropy.R
R/squaredHellingerDistance.R
R/divergencematrix.R
R/llr.R
R/convertMatrix.R
R/divergencematrixMultichannel.R
R/hypothesis.test.R
R/print.pdclust.R
R/loo1nn.R
R/codebook.R
R/rasterPlot.R
R/pdcDist.R
R/hellingerDistance.R
R/mdsPlot.R
R/print.mine.R
R/traceImage.R
R/str.pdclust.R
R/alphaDivergence.R
R/entropyHeuristic.R
R/convertMatrixMultichannel.R
R/symmetricAlphaDivergence.R
MD5
DESCRIPTION
man
man/mds.plot.Rd
man/loo1nn.Rd
man/pdc.dist.Rd
man/trace.image.Rd
man/codebook.Rd
man/distance.Rd
man/pdclust.Rd
man/pdc-package.Rd
man/entropy.heuristic.Rd
man/rasterPlot.Rd
man/complex.shapes.Rd
man/star.shapes.Rd
pdc documentation built on May 19, 2017, 9:59 p.m.

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