lumpAlleles: Allele lumping

Description Usage Arguments Value Examples

View source: R/reduceAlleles.R

Description

Perform allele lumping (i.e., merging unobserved alleles) for all markers attached to the input pedigree.

Usage

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lumpAlleles(x, markers = NULL, verbose = FALSE)

Arguments

x

A ped object or a list of such.

markers

A vector of names or indices referring to markers attached to x. (Default: All markers.)

verbose

A logical.

Value

An object similar to x, but whose attached markers have reduced allele set.

Examples

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x = nuclearPed()
x = setMarkers(x, marker(x, geno = c("1/1", NA, NA), alleles = 1:4))

# Before lumping
afreq(x, 1)

# Lump
y = lumpAlleles(x, verbose = TRUE)
afreq(y, 1)

pedprobr documentation built on Nov. 13, 2020, 5:06 p.m.