NEWS.md

In pedtricks: Visualize, Summarize and Simulate Data from Pedigrees

pedtricks 0.4

0.4.2

• more fix for CRAN submission

0.4.1

-ped_stats: more optimisation to run even faster. Now running in 0.7s on the gryphons pedigree instead of 160s so 210x faster. Loops are slow

0.4.0

• ped_stats: optimized to run much faster (I think it can even be improved). Now running in 1.6s on the gryphons pedigree instead of 160s so 100x faster. Now using sparse matrix format for A and removing some sluggish loops in estimations.

pedtricks 0.3

0.3.2

• ggpedigree()
• adding functionality to highlight phenotyped individuals with pheno argument

0.3.1

• ggpedigree()
• draw pedigree using ggplot2
• compatible with dplyr/tidyverse use
• return a ggplot object that can be modified with ggplot functions
• optimized graph layout with igrah
• draw_pedA()
• returns a trellis plot object for visualizing relatedness among pedigreed individuals

0.3.0

• ggpedigree()
• draw pedigree using ggplot2
• compatible with dplyr/tidyverse use
• return a ggplot object that can be modified with ggplot functions

pedtricks 0.1

• Initial transfer and update of CRAN archived pedantics package under the new name pedtricks.

DEPRECATED from pedantics

• rpederr()and fpederr() are not implemented
• pedigreeStats() and pedStatSummary() have been replaced by ped_stats() with a summary() and plot() methods to simplify the workflow and allow to get the plots without running the statistics each time
• makePedigreeFactor() and makePedigreeNumeric() have been combined in convert_ped() which convert a pedigree to numeric or factor

Small changes

• fixPedigree() is now fix_ped()
• genomesim(), microsim() and phensim() have been renamed as genome_sim(), micro_sim() and phen_sim()

pedtricks documentation built on Sept. 11, 2024, 8:15 p.m.