penalizedSVM: Feature Selection SVM using penalty functions

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This package provides feature selection SVM using penalty functions. The smoothly clipped absolute deviation (SCAD), 'L1-norm', 'Elastic Net' ('L1-norm' and 'L2-norm') and 'Elastic SCAD' (SCAD and 'L2-norm') penalties are availible. The tuning parameters can be founf using either a fixed grid or a interval search.

Author
Natalia Becker, Wiebke Werft, Axel Benner
Date of publication
2012-10-29 08:59:25
Maintainer
Natalia Becker <natalia.becker@dkfz.de>
License
GPL (>= 2)
Version
1.1

View on CRAN

Man pages

EPSGO
Fits SVM mit variable selection using penalties.
findgacv.scad
Calculate Generalized Approximate Cross Validation Error...
penalizedSVM-internal
Internal penaltySVM objects
penalizedSVM-package
Feature Selection SVM using Penalty Functions
predict
Predict Method for Feature Selection SVM
print
Print Function for FS SVM
scadsvc
Fit SCAD SVM model
simulate.data
Simulation of microarray data
sortmat
Sort matrix or data frame
svm.1norm
Fit L1-norm SVM
svm.fs
Fits SVM mit variable selection using penalties.

Files in this package

penalizedSVM
penalizedSVM/NAMESPACE
penalizedSVM/man
penalizedSVM/man/penalizedSVM-internal.Rd
penalizedSVM/man/svm.fs.Rd
penalizedSVM/man/simulate.data.Rd
penalizedSVM/man/scadsvc.Rd
penalizedSVM/man/sortmat.Rd
penalizedSVM/man/print.Rd
penalizedSVM/man/EPSGO.Rd
penalizedSVM/man/findgacv.scad.Rd
penalizedSVM/man/penalizedSVM-package.Rd
penalizedSVM/man/svm.1norm.Rd
penalizedSVM/man/predict.Rd
penalizedSVM/DESCRIPTION
penalizedSVM/MD5
penalizedSVM/R
penalizedSVM/R/ExpImprovement.R
penalizedSVM/R/print_1norm_svm.R
penalizedSVM/R/predict.DrHSVM.R
penalizedSVM/R/Direct.R
penalizedSVM/R/svm.fs.R
penalizedSVM/R/calc_scad.R
penalizedSVM/R/simulate.data.R
penalizedSVM/R/findgacv.scad.R
penalizedSVM/R/predict.R
penalizedSVM/R/hhsvm.r
penalizedSVM/R/svm.1norm.R
penalizedSVM/R/run_interval_search.R
penalizedSVM/R/sortmat.R
penalizedSVM/R/EPSGO.R
penalizedSVM/R/calc_DrHSVM.R
penalizedSVM/R/plot_EPSGO_params.R
penalizedSVM/R/penalizedSVM-internal.R
penalizedSVM/R/run_discrete_search.R
penalizedSVM/R/scad_L2.svc.R
penalizedSVM/R/scad_svc.R
penalizedSVM/R/extend_to_quad_matrix.R
penalizedSVM/R/calc_1norm.R
penalizedSVM/R/run.cv.R
penalizedSVM/R/calc_scad_L2.R
penalizedSVM/R/print_scad_svm.R