penalizedSVM: Feature Selection SVM using penalty functions
Version 1.1

This package provides feature selection SVM using penalty functions. The smoothly clipped absolute deviation (SCAD), 'L1-norm', 'Elastic Net' ('L1-norm' and 'L2-norm') and 'Elastic SCAD' (SCAD and 'L2-norm') penalties are availible. The tuning parameters can be founf using either a fixed grid or a interval search.

Browse man pages Browse package API and functions Browse package files

AuthorNatalia Becker, Wiebke Werft, Axel Benner
Date of publication2012-10-29 08:59:25
MaintainerNatalia Becker <natalia.becker@dkfz.de>
LicenseGPL (>= 2)
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("penalizedSVM")

Man pages

EPSGO: Fits SVM mit variable selection using penalties.
findgacv.scad: Calculate Generalized Approximate Cross Validation Error...
penalizedSVM-internal: Internal penaltySVM objects
penalizedSVM-package: Feature Selection SVM using Penalty Functions
predict: Predict Method for Feature Selection SVM
print: Print Function for FS SVM
scadsvc: Fit SCAD SVM model
simulate.data: Simulation of microarray data
sortmat: Sort matrix or data frame
svm.1norm: Fit L1-norm SVM
svm.fs: Fits SVM mit variable selection using penalties.

Functions

.EstNuLong Man page
.EstNuShort Man page
.Random.seed Man page
.calc.mult.inv_Q_mat2 Man page
.core Man page
.correctness Man page
.create.covariance.matrix Man page
.extend.to.quad.matrix Man page
.find.inverse Man page
.required Man page
.run.cv Man page
.whatiscorrect Man page
CallConstraints Source code
CallObjFcn Source code
DIRdivide Source code
DIRini Source code
DetermineFcnType Source code
Direct Man page Source code
DrHSVM Man page Source code
DrHSVM.GACV Source code
DrHSVM.initial Source code
DrHSVM.predict Source code
EPSGO Man page Source code
ExpImprovement Man page Source code
calc.1norm Source code
calc.DrHSVM Source code
calc.mult.inv_Q_mat2 Source code
calc.scad Source code
calc.scad_L2 Source code
calc.test.error.scad Source code
calc_lbound Source code
calc_ubound Source code
dloss.df Source code
du.df Source code
erf Source code
extend.to.quad.matrix Source code
find_po Source code
findgacv.scad Man page Source code
func.u Source code
loss Source code
lpsvm Man page Source code
normcdf Source code
normpdf Source code
penalizedSVM Man page
penalizedSVM-package Man page
plot.EPSGO.parms Source code
predict.penSVM Man page Source code
print.1norm.svm Man page
print.scad.svm Man page
replaceinf Source code
run.discrete Source code
run.interval Source code
scad_L2.svc Man page Source code
scadsvc Man page Source code
sim.data Man page Source code
sortmat Man page Source code
svm.fs Man page Source code
svm.fs.default Man page

Files

NAMESPACE
man
man/penalizedSVM-internal.Rd
man/svm.fs.Rd
man/simulate.data.Rd
man/scadsvc.Rd
man/sortmat.Rd
man/print.Rd
man/EPSGO.Rd
man/findgacv.scad.Rd
man/penalizedSVM-package.Rd
man/svm.1norm.Rd
man/predict.Rd
DESCRIPTION
MD5
R
R/ExpImprovement.R
R/print_1norm_svm.R
R/predict.DrHSVM.R
R/Direct.R
R/svm.fs.R
R/calc_scad.R
R/simulate.data.R
R/findgacv.scad.R
R/predict.R
R/hhsvm.r
R/svm.1norm.R
R/run_interval_search.R
R/sortmat.R
R/EPSGO.R
R/calc_DrHSVM.R
R/plot_EPSGO_params.R
R/penalizedSVM-internal.R
R/run_discrete_search.R
R/scad_L2.svc.R
R/scad_svc.R
R/extend_to_quad_matrix.R
R/calc_1norm.R
R/run.cv.R
R/calc_scad_L2.R
R/print_scad_svm.R
penalizedSVM documentation built on May 20, 2017, 1:57 a.m.