permGPU: Using GPUs in Statistical Genomics

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Can be used to carry out permutation resampling inference in the context of RNA microarray studies.

Author
Ivo D. Shterev [aut, cre], Kouros Owzar [aut], Sin-Ho Jung [aut], Stephen L. George [aut], Brian J. Smith [ctb, cph] (wrote original version of configure.ac file), Kenneth Wilder [ctb, cph] (wrote ranker.h), Romain Francois [ctb, cph] (wrote original version of cleanup file), Dirk Eddelbuettel [ctb, cph] (wrote original version of cleanup file)
Date of publication
2016-02-23 08:04:33
Maintainer
Ivo D. Shterev <i.shterev@duke.edu>
License
GPL-3
Version
0.14.9

View on CRAN

Man pages

makeExprSet
Create an expressionSet object for use with permGPU
permgpu
Conduct permutation resampling analysis using permGPU
permGPU-package
permGPU: Using graphics processing units in RNA microarray...
scoregpu
Computes score test statistic using permGPU
test.permgpu
Conduct permutation resampling analysis using permGPU
test.scoregpu
Conduct permutation resampling analysis using permGPU

Files in this package

permGPU
permGPU/configure.ac
permGPU/src
permGPU/src/Makefile.in
permGPU/src/permGPU.cu
permGPU/src/ranker.h
permGPU/NAMESPACE
permGPU/NEWS
permGPU/R
permGPU/R/permgpu.R
permGPU/R/makeExprSet.R
permGPU/R/test.permgpu.R
permGPU/R/test.scoregpu.R
permGPU/R/scoregpu.R
permGPU/MD5
permGPU/DESCRIPTION
permGPU/configure
permGPU/man
permGPU/man/test.scoregpu.Rd
permGPU/man/makeExprSet.Rd
permGPU/man/test.permgpu.Rd
permGPU/man/permGPU-package.Rd
permGPU/man/scoregpu.Rd
permGPU/man/permgpu.Rd
permGPU/cleanup