permubiome: A Permutation Based Test for Biomarker Discovery in Microbiome Data
Version 1.1

All the functions compiled in this package were created to perform permutation-based non-parametric analysis on microbiome data for biomarker discovery aims. This test executes thousands of comparisons in pairwise manner, after random shuffling of data into the different groups of study.

AuthorAlfonso Benitez-Paez
Date of publication2016-03-23 00:34:11
MaintainerAlfonso Benitez-Paez <abenitez@iata.csic.es>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("permubiome")

Popular man pages

get.data: Parsing the data file.
normalize: Normalize the microbiome dataset prior to perform the...
permubiome: A Permutation Based Test for Biomarker Discovery in...
permutation: Permutation-based non-parametric analysis to infer...
plots: Plotting the features with differential abundance.
See all...

All man pages Function index File listing

Man pages

get.data: Parsing the data file.
normalize: Normalize the microbiome dataset prior to perform the...
permubiome: A Permutation Based Test for Biomarker Discovery in...
permutation: Permutation-based non-parametric analysis to infer...
plots: Plotting the features with differential abundance.

Functions

Permutation test for microbiome data Man page
get.data Man page Source code
normalize Man page Source code
permubiome Man page
permutation Man page Source code
plots Man page Source code

Files

inst
inst/extdat
inst/extdat/DATA_2
inst/extdat/DATA_1
NAMESPACE
R
R/get.data.R
R/plots.R
R/permutation.R
R/normalize.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/get.data.Rd
man/permubiome.Rd
man/plots.Rd
man/permutation.Rd
man/normalize.Rd
permubiome documentation built on May 19, 2017, 8:26 a.m.