permute: Functions for Generating Restricted Permutations of Data

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A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.

Author
Gavin L. Simpson [aut, cph, cre], R Core Team [cph], Douglas M. Bates [ctb], Jari Oksanen [ctb]
Date of publication
2016-09-09 10:13:49
Maintainer
Gavin L. Simpson <ucfagls@gmail.com>
License
GPL-2
Version
0.9-4
URLs

View on CRAN

Man pages

allPerms
Complete enumeration of all possible permutations
allUtils
Utility functions for complete enumeration of all possible...
check
Utility functions for permutation schemes
get-methods
Extractor functions to access components of a permutation...
how
How to define a permutation design?
jackal
Mandible lengths of male and female golden jackals
nobs
Number of observations in a given object
numPerms
Number of possible permutations for a given object
set-methods
Replacement functions to set components of a permutation...
shuffle
Unrestricted and restricted permutations
shuffleSet
Generate a set of permutations from the specified design.
shuffle-utils
Utility functions for unrestricted and restricted...

Files in this package

permute
permute/inst
permute/inst/NEWS
permute/inst/TODO.md
permute/inst/COPYRIGHTS
permute/inst/ChangeLog
permute/inst/doc
permute/inst/doc/permutations.R
permute/inst/doc/permutations.pdf
permute/inst/doc/permutations.Rnw
permute/tests
permute/tests/Examples
permute/tests/Examples/permute-Ex.Rout.save
permute/tests/testthat.R
permute/tests/testthat
permute/tests/testthat/test-nobs.R
permute/tests/testthat/test-numPerms.R
permute/tests/testthat/test-allPerms.R
permute/tests/testthat/test-get-methods.R
permute/tests/testthat/test-set-methods.R
permute/tests/testthat/test-shuffle.R
permute/tests/testthat/test-shuffle-utils.R
permute/tests/testthat/test-blocks.R
permute/tests/testthat/test-as-methods.R
permute/tests/testthat/test-permute-fun.R
permute/tests/testthat/test-how.R
permute/tests/testthat/test-check.R
permute/tests/testthat/test-shuffleSet.R
permute/NAMESPACE
permute/data
permute/data/jackal.rda
permute/R
permute/R/as.matrix.permutationMatrix.R
permute/R/numPerms.R
permute/R/Within.R
permute/R/as.matrix.allPerms.R
permute/R/getFoo-methods.R
permute/R/how.R
permute/R/print.allPerms.R
permute/R/print.summary.allPerms.R
permute/R/update.how.R
permute/R/check.R
permute/R/print.permutationMatrix.R
permute/R/shuffleSet.R
permute/R/fixupCall.R
permute/R/nobs-methods.R
permute/R/setFoo-methods.R
permute/R/allSeries.R
permute/R/print.summary.check.R
permute/R/shuffle.R
permute/R/allPerms.R
permute/R/summary.check.R
permute/R/update.Plots.R
permute/R/print.how.R
permute/R/allFree.R
permute/R/summary.allPerms.R
permute/R/blocks.R
permute/R/shuffle-utils.R
permute/R/Plots.R
permute/R/print.check.R
permute/R/permute.R
permute/R/allStrata.R
permute/R/as.allPerms.R
permute/R/cbindAllPerms.R
permute/R/allGrid.R
permute/vignettes
permute/vignettes/permute.bib
permute/vignettes/permutations.Rnw
permute/README.md
permute/MD5
permute/build
permute/build/vignette.rds
permute/DESCRIPTION
permute/man
permute/man/how.Rd
permute/man/nobs.Rd
permute/man/get-methods.Rd
permute/man/allPerms.Rd
permute/man/shuffleSet.Rd
permute/man/numPerms.Rd
permute/man/set-methods.Rd
permute/man/check.Rd
permute/man/allUtils.Rd
permute/man/jackal.Rd
permute/man/shuffle.Rd
permute/man/shuffle-utils.Rd