permute: Functions for Generating Restricted Permutations of Data

A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.

AuthorGavin L. Simpson [aut, cph, cre], R Core Team [cph], Douglas M. Bates [ctb], Jari Oksanen [ctb]
Date of publication2016-09-09 10:13:49
MaintainerGavin L. Simpson <ucfagls@gmail.com>
LicenseGPL-2
Version0.9-4
https://github.com/gavinsimpson/permute

View on CRAN

Files in this package

permute
permute/inst
permute/inst/NEWS
permute/inst/TODO.md
permute/inst/COPYRIGHTS
permute/inst/ChangeLog
permute/inst/doc
permute/inst/doc/permutations.R
permute/inst/doc/permutations.pdf
permute/inst/doc/permutations.Rnw
permute/tests
permute/tests/Examples
permute/tests/Examples/permute-Ex.Rout.save
permute/tests/testthat.R
permute/tests/testthat
permute/tests/testthat/test-nobs.R
permute/tests/testthat/test-numPerms.R
permute/tests/testthat/test-allPerms.R
permute/tests/testthat/test-get-methods.R
permute/tests/testthat/test-set-methods.R
permute/tests/testthat/test-shuffle.R
permute/tests/testthat/test-shuffle-utils.R
permute/tests/testthat/test-blocks.R
permute/tests/testthat/test-as-methods.R
permute/tests/testthat/test-permute-fun.R
permute/tests/testthat/test-how.R
permute/tests/testthat/test-check.R
permute/tests/testthat/test-shuffleSet.R
permute/NAMESPACE
permute/data
permute/data/jackal.rda
permute/R
permute/R/as.matrix.permutationMatrix.R permute/R/numPerms.R permute/R/Within.R permute/R/as.matrix.allPerms.R permute/R/getFoo-methods.R permute/R/how.R permute/R/print.allPerms.R permute/R/print.summary.allPerms.R permute/R/update.how.R permute/R/check.R permute/R/print.permutationMatrix.R permute/R/shuffleSet.R permute/R/fixupCall.R permute/R/nobs-methods.R permute/R/setFoo-methods.R permute/R/allSeries.R permute/R/print.summary.check.R permute/R/shuffle.R permute/R/allPerms.R permute/R/summary.check.R permute/R/update.Plots.R permute/R/print.how.R permute/R/allFree.R permute/R/summary.allPerms.R permute/R/blocks.R permute/R/shuffle-utils.R permute/R/Plots.R permute/R/print.check.R permute/R/permute.R permute/R/allStrata.R permute/R/as.allPerms.R permute/R/cbindAllPerms.R permute/R/allGrid.R
permute/vignettes
permute/vignettes/permute.bib
permute/vignettes/permutations.Rnw
permute/README.md
permute/MD5
permute/build
permute/build/vignette.rds
permute/DESCRIPTION
permute/man
permute/man/how.Rd permute/man/nobs.Rd permute/man/get-methods.Rd permute/man/allPerms.Rd permute/man/shuffleSet.Rd permute/man/numPerms.Rd permute/man/set-methods.Rd permute/man/check.Rd permute/man/allUtils.Rd permute/man/jackal.Rd permute/man/shuffle.Rd permute/man/shuffle-utils.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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