perturbR: Perturb networks and evaluate subgroup structures.

In perturbR: Random Perturbation of Count Matrices

Description

Randomly rewires networks in increasing degrees of perturbation to evaluate stability of community solutions obtained from Walktrap.

Usage

perturbR(sym.matrix, plot = TRUE, resolution = 0.01, reps = 100,
  errbars = FALSE)

Arguments

sym.matrix	A symmetric, sparse count matrix object
plot	Logical, defaults to TRUE
resolution	The percentage of edges to iteratively alter. One percent is default, increase to go quicker.
reps	The number of repititions to do for each level of perturbation. Decrease to make it go quicker.
errbars	Logical, defaults to FALSE. Option to add error bars of one standard deviation above and below the mean for each point.

Examples

perturbR(exampledata, plot=FALSE, resolution=0.10, reps=1, errbars = FALSE)

perturbR documentation built on May 2, 2019, 3:25 p.m.