| .onLoad |
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| add_admid |
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| add_allometry |
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| add_bioavailability |
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| add_cmt |
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| add_covariate_effect |
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| add_derivative |
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| add_effect_compartment |
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| add_estimation_step |
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| add_iiv |
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| add_indirect_effect |
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| add_individual_parameter |
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| add_iov |
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| add_lag_time |
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| add_metabolite |
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| add_parameter_uncertainty_step |
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| add_pd_iiv |
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| add_peripheral_compartment |
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| add_pk_iiv |
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| add_population_parameter |
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| add_predictions |
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| add_residuals |
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| add_time_after_dose |
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| append_estimation_step_options |
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| bin_observations |
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| broadcast_log |
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| bump_model_number |
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| calculate_aic |
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| calculate_bic |
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| calculate_corr_from_cov |
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| calculate_corr_from_prec |
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| calculate_cov_from_corrse |
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| calculate_cov_from_prec |
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| calculate_epsilon_gradient_expression |
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| calculate_eta_gradient_expression |
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| calculate_eta_shrinkage |
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| calculate_individual_parameter_statistics |
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| calculate_individual_shrinkage |
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| calculate_parameters_from_ucp |
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| calculate_pk_parameters_statistics |
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| calculate_prec_from_corrse |
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| calculate_prec_from_cov |
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| calculate_se_from_cov |
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| calculate_se_from_prec |
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| calculate_ucp_scale |
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| check_dataset |
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| check_high_correlations |
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| check_parameters_near_bounds |
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| check_pharmpy |
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| check_setup |
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| check_setup_pharmpy |
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| check_setup_python |
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| cleanup_model |
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| convert_input |
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| convert_model |
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| create_basic_pk_model |
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| create_config_template |
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| create_joint_distribution |
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| create_report |
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| create_rng |
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| create_symbol |
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| deidentify_data |
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| display_odes |
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| drop_columns |
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| drop_dropped_columns |
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| evaluate_epsilon_gradient |
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| evaluate_eta_gradient |
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| evaluate_expression |
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| evaluate_individual_prediction |
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| evaluate_population_prediction |
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| evaluate_weighted_residuals |
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| expand_additional_doses |
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| filter_dataset |
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| find_clearance_parameters |
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| find_volume_parameters |
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| fit |
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| fix_or_unfix_parameters |
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| fix_parameters |
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| fix_parameters_to |
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| get_admid |
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| get_baselines |
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| get_bioavailability |
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| get_central_volume_and_clearance |
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| get_cmt |
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| get_concentration_parameters_from_data |
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| get_config_path |
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| get_covariate_baselines |
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| get_covariate_effects |
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| get_doseid |
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| get_doses |
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| get_dv_symbol |
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| get_evid |
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| get_ids |
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| get_individual_parameters |
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| get_individual_prediction_expression |
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| get_initial_conditions |
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| get_lag_times |
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| get_mdv |
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| get_model_code |
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| get_model_covariates |
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| get_mu_connected_to_parameter |
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| get_nested_model |
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| get_number_of_individuals |
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| get_number_of_observations |
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| get_number_of_observations_per_individual |
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| get_number_of_peripheral_compartments |
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| get_number_of_transit_compartments |
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| get_observation_expression |
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| get_observations |
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| get_omegas |
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| get_parameter_rv |
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| get_pd_parameters |
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| get_pk_parameters |
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| get_population_prediction_expression |
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| get_rv_parameters |
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| get_sigmas |
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| get_thetas |
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| get_unit_of |
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| get_zero_order_inputs |
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| greekify_model |
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| has_additive_error_model |
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| has_combined_error_model |
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| has_covariate_effect |
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| has_first_order_absorption |
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| has_first_order_elimination |
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| has_instantaneous_absorption |
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| has_linear_odes |
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| has_linear_odes_with_real_eigenvalues |
Man page
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| has_michaelis_menten_elimination |
Man page
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| has_mixed_mm_fo_elimination |
Man page
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| has_mu_reference |
Man page
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| has_odes |
Man page
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| has_presystemic_metabolite |
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| has_proportional_error_model |
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| has_random_effect |
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| has_seq_zo_fo_absorption |
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| has_weibull_absorption |
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| has_weighted_error_model |
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| has_zero_order_absorption |
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| has_zero_order_elimination |
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| install_pharmpy |
Man page
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| install_pharmpy_devel |
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| is_linearized |
Man page
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| is_named_onedim |
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| is_real |
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| is_simulation_model |
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| is_strictness_fulfilled |
Man page
Source code
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| knit_print.pharmpy.model.distributions.symbolic.JointNormalDistr |
Source code
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| knit_print.pharmpy.model.distributions.symbolic.NormalDistributi |
Source code
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| knit_print.pharmpy.model.random_variables.RandomVariables |
Source code
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| knit_print.pharmpy.model.statements.Assignment |
Source code
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| knit_print.pharmpy.model.statements.Statements |
Source code
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| knit_print.pharmpy.modeling.odes.ODEDisplayer |
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| length.pharmpy.model.parameters.Parameters |
Source code
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| list_models |
Man page
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| list_time_varying_covariates |
Man page
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| load_dataset |
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| load_example_model |
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| load_example_modelfit_results |
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| make_declarative |
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| mu_reference_model |
Man page
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| named_onedim_to_list |
Source code
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| omit_data |
Man page
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| on_error_pharmpy |
Source code
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| on_load_pharmpy |
Source code
|
| open_context |
Man page
Source code
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| plot_abs_cwres_vs_ipred |
Man page
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| plot_cwres_vs_idv |
Man page
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| plot_dv_vs_ipred |
Man page
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| plot_dv_vs_pred |
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| plot_eta_distributions |
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| plot_individual_predictions |
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| plot_iofv_vs_iofv |
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| plot_transformed_eta_distributions |
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| plot_vpc |
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| predict_influential_individuals |
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|
| predict_influential_outliers |
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| predict_outliers |
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| print_fit_summary |
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| print_log |
Man page
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| print_model_code |
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|
| print_model_symbols |
Man page
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|
| print_pharmpy_version |
Man page
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| print_status |
Source code
|
| read_dataset_from_datainfo |
Man page
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|
| read_model |
Man page
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| read_model_from_string |
Man page
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| read_modelfit_results |
Man page
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| read_results |
Man page
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|
| remove_bioavailability |
Man page
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|
| remove_covariate_effect |
Man page
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|
| remove_derivative |
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|
| remove_error_model |
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| remove_estimation_step |
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| remove_iiv |
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| remove_iov |
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| remove_lag_time |
Man page
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| remove_loq_data |
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| remove_parameter_uncertainty_step |
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| remove_peripheral_compartment |
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| remove_predictions |
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| remove_residuals |
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| remove_unused_parameters_and_rvs |
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| rename_symbols |
Man page
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| replace_fixed_thetas |
Man page
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| replace_non_random_rvs |
Man page
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|
| repr_html.pharmpy.model.statements.Statements |
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| repr_latex.pharmpy.model.distributions.symbolic.JointNormalDistr |
Source code
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| repr_latex.pharmpy.model.distributions.symbolic.NormalDistributi |
Source code
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| repr_latex.pharmpy.model.random_variables.RandomVariables |
Source code
|
| repr_latex.pharmpy.model.statements.Assignment |
Source code
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| repr_latex.pharmpy.modeling.odes.ODEDisplayer |
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| resample_data |
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| reset_index |
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| reset_index_df |
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| reset_indices_results |
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| retrieve_model |
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| retrieve_modelfit_results |
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| retrieve_models |
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| run_allometry |
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| run_amd |
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| run_bootstrap |
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| run_covsearch |
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| run_estmethod |
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| run_iivsearch |
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| run_iovsearch |
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| run_linearize |
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| run_modelfit |
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| run_modelsearch |
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| run_retries |
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| run_ruvsearch |
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| run_simulation |
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| run_structsearch |
Man page
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| run_tool |
Man page
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| sample_individual_estimates |
Man page
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|
| sample_parameters_from_covariance_matrix |
Man page
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| sample_parameters_uniformly |
Man page
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|
| set_additive_error_model |
Man page
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| set_baseline_effect |
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| set_combined_error_model |
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| set_covariates |
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| set_dataset |
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| set_description |
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| set_direct_effect |
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| set_dtbs_error_model |
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| set_dvid |
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| set_estimation_step |
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| set_evaluation_step |
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| set_first_order_absorption |
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| set_first_order_elimination |
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| set_iiv_on_ruv |
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| set_initial_condition |
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| set_initial_estimates |
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| set_instantaneous_absorption |
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| set_lloq_data |
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| set_lower_bounds |
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| set_michaelis_menten_elimination |
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| set_mixed_mm_fo_elimination |
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| set_name |
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| set_ode_solver |
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| set_peripheral_compartments |
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| set_power_on_ruv |
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| set_proportional_error_model |
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| set_reference_values |
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| set_seq_zo_fo_absorption |
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| set_simulation |
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| set_time_varying_error_model |
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| set_tmdd |
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| set_transit_compartments |
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| set_upper_bounds |
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| set_weibull_absorption |
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| set_weighted_error_model |
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| set_zero_order_absorption |
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| set_zero_order_elimination |
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| set_zero_order_input |
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| simplify_expression |
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| solve_ode_system |
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| split_joint_distribution |
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| summarize_modelfit_results |
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| to_list |
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| transform_blq |
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| transform_etas_boxcox |
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| transform_etas_john_draper |
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| transform_etas_tdist |
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| translate_nmtran_time |
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| unconstrain_parameters |
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| undrop_columns |
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| unfix_parameters |
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| unfix_parameters_to |
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| unload_dataset |
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| update_initial_individual_estimates |
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| use_thetas_for_error_stdev |
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| write_csv |
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| write_model |
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| write_results |
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