| autoFilter | A multiple-approach filtering procedure |
| bartlett2009 | Bartlett 2009 raw data |
| bartlett2009.filtered | Bartlett 2009 dataset filtered |
| bartlett2009.fitted | Bartlett 2009 dataset with computed fitting and uncertainty... |
| bartlett2009.processed | Bartlett 2009 dataset processed by greenExplore function |
| BeckFit | Fit a double logistic equation to a time series according to... |
| combineUncertainty | An evolution of 'greenProcess' for the combination of... |
| convert | Convert in data.frame a 'zoo' or 'ts' object |
| convertROI | Convert a region of interest object from the old structure to... |
| CutSeason | Cut time series by visual estimation |
| DrawMULTIROI | Draw a Region of Interest |
| editExposure | Change erroneous exposure values by hand |
| ElmoreFit | Fit a double logistic equation to a time series according to... |
| extract | Extract items from an object of class phenopix |
| extractDateFilename | Estract dates from filenames |
| extractParameters | Extract fitting parameters from a pixel-based analysis |
| extractVIs | Extracts various vegetation indexes in a ROI |
| FitDoubleLogBeck | A fit |
| FitDoubleLogElmore | A fit |
| FitDoubleLogGu | Fit a double logistic equation to a vector according to Gu et... |
| FitDoubleLogKlHeavy | Fit a double logistic function to a vector according to... |
| FitDoubleLogKlLight | Fit a double logistic equation to a vector according to... |
| fitted.phenopix | Returns predicted values from 'phenopix' objects. |
| getCoords | Extract coordinates (in pixels) of the exposure string from a... |
| getExposure | Extract exposure from stardot (or similar) images |
| get.options | Returns default options for function 'autoFilter'. |
| greenClusters | Performs a cluster analysis on data in output from... |
| greenExplore | Explore all possible fitting and theshold methods from the... |
| greenProcess | Fit a curve and extract thresholds from vegetation index time... |
| GuFit | Fit a double logistic equation to a time series according to... |
| hydrodoy | Converts from and to hydrological day of year |
| KlostermanFit | Fit a double logistic equation to a vector according to... |
| matchExposure | Match exposures retrieved from the header of (stardot)... |
| NDVI | Compute NDVI from Phenocam color indices |
| PasteSeason | A plotting facility for seasonal data with multiple cycles |
| PhenoBP | Extract breakpoints on a time series |
| PhenoDeriv | Extract phenophases from a fitted equation with method... |
| PhenoExtract | Generic function for the extraction of phenological... |
| PhenoGu | Extract phenophases from a fitted equation according to Gu et... |
| PhenoKl | Extract phenophases from a fitted equation according to... |
| phenopix-package | A package for the processing of images of a vegetation cover |
| PhenoPlot | A plotting function for phenological thresholds |
| PhenoTrs | A phenophase method based on fixed thresholds |
| plotBP | A function to plot results of function 'PhenoBP' |
| plotExplore | Plot an object in output from the greenExplore function |
| plot.phenopix | Plotting 'phenopix' objects. |
| plotSpatial | Plot pixel-based analysis results from spatialGreen and... |
| plotSum | A plotting facility to show the combination of uncertainty |
| plotVI | Plot RGB DN, RGB indices and brightness |
| print.phenopix | Print 'phenopix' objects. |
| PrintROI | Print an already drawn region of interest |
| resizeImage | Resize an image (and a tROI) to a given pixel resolution |
| spatialFilter | Explore all possible fitting and theshold methods from the... |
| spatialGreen | Process pixel-based greenness indexes |
| SplineFit | A function to fit a smoothed spline to Phenological Data |
| splitROI | Splits a ROI into multiple subrois for spatial analysis |
| structureFolder | Fast structuration of a folder for phenopix process |
| summarizePhases | An evolution of 'greenProcess' for the combination of... |
| summary.phenopix | Summary of 'phenopix' objects. |
| trainOCR | Extract a training dataset for OCR procedure |
| update.phenopix | Update 'phenopix' objects. |
| updateROI | Update pixels included in a ROI of different pixel size |
