phmm: Proportional Hazards Mixed-effects Model (PHMM)

Fits proportional hazards model incorporating random effects using an EM algorithm using Markov Chain Monte Carlo at E-step.

Author
Michael Donohue and Ronghui Xu
Date of publication
2013-09-21 10:00:49
Maintainer
Michael Donohue <mdonohue@ucsd.edu>
License
GPL-3
Version
0.7-5

View on CRAN

Man pages

AIC.phmm
Akaike Information Criterion for PHMM
cAIC
Conditional Akaike Information Criterion for PHMM
linear.predictors
PHMM Design
loglik.cond
PHMM conditional log-likelihood
phmm
Proportional Hazards Model with Mixed Effects
phmm.cond.loglik
PHMM conditional log-likelihood
phmm-package
Proportional Hazards with Mixed Model (PHMM)
plot.phmm
Plots the convergence of MCMC-EM estimates from a PHMM
pseudoPoisPHMM
Pseudo poisson data for fitting PHMM via GLMM
traceHat
Trace of the "hat" matrix from PHMM-MCEM fit

Files in this package

phmm
phmm/COPYING
phmm/inst
phmm/inst/CITATION
phmm/inst/doc
phmm/inst/doc/phmm_poisson_df.pdf
phmm/inst/doc/phmm_poisson_df.Rnw
phmm/inst/doc/phmm_poisson_df.R
phmm/src
phmm/src/remnewt.c
phmm/src/arms.h
phmm/src/phmm.h
phmm/src/phmm.c
phmm/src/lubksb.c
phmm/src/myludcmp.c
phmm/src/reffvar.c
phmm/src/ludcmp.c
phmm/src/gasdev.c
phmm/src/ran1.c
phmm/src/init.c
phmm/src/arms.c
phmm/src/mylubksb.c
phmm/NAMESPACE
phmm/R
phmm/R/linear.predictors.R
phmm/R/traceHat.R
phmm/R/formula.R
phmm/R/phmm.R
phmm/R/pseudoPoisPHMM.R
phmm/vignettes
phmm/vignettes/phmm_poisson_df.Rnw
phmm/MD5
phmm/build
phmm/build/vignette.rds
phmm/DESCRIPTION
phmm/man
phmm/man/AIC.phmm.Rd
phmm/man/linear.predictors.Rd
phmm/man/cAIC.Rd
phmm/man/phmm.cond.loglik.Rd
phmm/man/plot.phmm.Rd
phmm/man/pseudoPoisPHMM.Rd
phmm/man/traceHat.Rd
phmm/man/phmm.Rd
phmm/man/loglik.cond.Rd
phmm/man/phmm-package.Rd