DNA SNP patterns and sampling days of an M. tuberculosis outbreak with 33 cases in Canada (Didelot et al, 2013). The dataset contained only 20 SNP patterns with unspecified nucleotides, so the sequences in this dataset contain only 'a' and 'c' on these 20 loci. Additional loci with only 'a' are added to a total sequence length of 440,000, which is 10
A list with two elements:
the sequences (class
the sampling days (class
Didelot et al. (2013) Bayesian inference of infectious disease transmission from whole-genome sequence data. Mol Biol Evol, 31(7): 1869-1879.
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