phylocomr gives you access to Phylocom, specifically the
Phylocom C library (https://github.com/phylocom/phylocom/),
licensed under BSD 2-clause
This package isn't doing system calls to a separately installed Phylocom instance - but actually includes Phylocom itself in the package.
Phylocom is usually used either on the command line or through the R package picante, which has duplicated some of the Phylocom functionality.
In terms of performance, some functionality will be faster here than
picante, but the maintainers of
picante have re-written some
Phylocom functionality in C/C++, so performance should be similar in
ph_ecovolve() - interface to
and a higher level interface
ph_phylomatic() - interface to
executable, and a higher level interface
phylocom() - interface to
ph_aot() - higher level interface to
ph_bladj() - higher level interface to
ph_comdistnt() - higher level interface to comdist
ph_comstruct() - higher level interface to comstruct
ph_comtrait() - higher level interface to comtrait
ph_pd() - higher level interface to Faith's phylogenetic diversity
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