phylometrics: Estimating Statistical Errors of Phylogenetic Metrics

Provides functions to estimate statistical errors of phylogenetic metrics particularly to detect binary trait influence on diversification, as well as a function to simulate trees with fixed number of sampled taxa and trait prevalence.

Author
Xia Hua <xia.hua@anu.edu.au>, Lindell Bromham <lindell.bromham@anu.edu.au>
Date of publication
2015-11-17 14:40:44
Maintainer
Xia Hua <xia.hua@anu.edu.au>
License
GPL (>= 2)
Version
0.0.1

View on CRAN

Man pages

fpd
calculate the Fritz & Purvis D (FPD) metric
noto
calculate the number of tips per origin (NoTO) metric
sscd
calculate the sum of sister clade differences (SSCD) metric
tars
calculate the tip age rank sum (TARS) metric
treesim
Simulate trees with fixed number of sampled taxa and trait...
treestat
Significance test of user defined phylogenetic metric

Files in this package

phylometrics
phylometrics/tests
phylometrics/tests/testthat.R
phylometrics/tests/testthat
phylometrics/tests/testthat/test.R
phylometrics/NAMESPACE
phylometrics/R
phylometrics/R/fpd.R
phylometrics/R/treesim.R
phylometrics/R/sscd.R
phylometrics/R/noto.R
phylometrics/R/tars.R
phylometrics/R/treestat.R
phylometrics/README.md
phylometrics/MD5
phylometrics/DESCRIPTION
phylometrics/man
phylometrics/man/treestat.Rd
phylometrics/man/tars.Rd
phylometrics/man/fpd.Rd
phylometrics/man/sscd.Rd
phylometrics/man/treesim.Rd
phylometrics/man/noto.Rd