phylometrics: Estimating Statistical Errors of Phylogenetic Metrics
Version 0.0.1

Provides functions to estimate statistical errors of phylogenetic metrics particularly to detect binary trait influence on diversification, as well as a function to simulate trees with fixed number of sampled taxa and trait prevalence.

Browse man pages Browse package API and functions Browse package files

AuthorXia Hua <xia.hua@anu.edu.au>, Lindell Bromham <lindell.bromham@anu.edu.au>
Date of publication2015-11-17 14:40:44
MaintainerXia Hua <xia.hua@anu.edu.au>
LicenseGPL (>= 2)
Version0.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("phylometrics")

Man pages

fpd: calculate the Fritz & Purvis D (FPD) metric
noto: calculate the number of tips per origin (NoTO) metric
sscd: calculate the sum of sister clade differences (SSCD) metric
tars: calculate the tip age rank sum (TARS) metric
treesim: Simulate trees with fixed number of sampled taxa and trait...
treestat: Significance test of user defined phylogenetic metric

Functions

fpd Man page Source code
noto Man page Source code
sscd Man page Source code
tars Man page Source code
treesim Man page Source code
treestat Man page Source code

Files

tests
tests/testthat.R
tests/testthat
tests/testthat/test.R
NAMESPACE
R
R/fpd.R
R/treesim.R
R/sscd.R
R/noto.R
R/tars.R
R/treestat.R
README.md
MD5
DESCRIPTION
man
man/treestat.Rd
man/tars.Rd
man/fpd.Rd
man/sscd.Rd
man/treesim.Rd
man/noto.Rd
phylometrics documentation built on May 19, 2017, 1:28 p.m.