dot-end.type: Classify Phylogenetic Endemism using rasters

In phyloraster: Evolutionary Diversity Metrics for Raster Data

Classify Phylogenetic Endemism using rasters

Description

Use the results of rast.pe.ses() to identify centers of paleo-, neo-, super-, and mixed- endemism following the CANAPE scheme of Mishler et al., 2014.

Usage

.end.type(x)

Arguments

x

SpatRaster. A SpatRaster object with the following layers in this specific order: pe.obs.p.upper : Upper p-value comparing the observed phylogenetic endemism and the randomized phylogenetic endemism values pe.alt.obs.p.upper : Upper p-value comparing the alternate phylogenetic endemism and the randomized alternate phylogenetic endemism rpe.obs.p.upper : Upper p-value comparing the relative phylogenetic endemism and the randomized relative phylogenetic endemism rpe.obs.p.lower : Lower p-value comparing the relative phylogenetic endemism and the randomized relative phylogenetic endemism

Value

SpatRaster

References

Mishler, B., Knerr, N., González-Orozco, C. et al. (2014) Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia. Nat Commun, 5: 4473. doi:10.1038/ncomms5473

phyloraster documentation built on April 3, 2025, 8:45 p.m.