Files in phylosamp

Sample Size Calculations for Molecular and Phylogenetic Studies

NEWS.md README.md R/obs_pairs_mtml.R R/true_pairs.R R/relR_samplesize.R R/translink_expected_links_obs_mtsl.R R/vartrack_prob_detect_cont.R R/translink_tdr.R R/prob_trans_mtml.R R/translink_fdr.R R/gendist_sensspec_cutoff.R R/varfreq_obs_freq.R R/vartrack_samplesize_prev_xsect.R R/relR_samplesize_solve.R R/true_pairs_mtml.R R/gen_dists.R R/vartrack_prob_detect_xsect.R R/vartrack_prob_detect.R R/relR_power.R R/vartrack_samplesize_detect.R R/phylosamp-package.R R/translink_expected_links_true.R R/genDistSim.R R/vartrack_samplesize_prev.R R/translink_samplesize.R R/translink_prob_transmit_stsl.R R/translink_expected_links_true_stsl.R R/translink_expected_links_true_mtml.R R/vartrack_prob_prev_xsect.R R/relR_samplesize_basic.R R/translink_prob_transmit_mtsl.R R/sens_spec_calc.R R/translink_prob_transmit.R R/varfreq_cdf_logistic.R R/sens_spec_roc.R R/translink_expected_links_true_mtsl.R R/vartrack_cod_ratio.R R/relR_samplesize_simsolve.R R/vartrack_samplesize_detect_xsect.R R/varfreq_expected_mbias.R R/translink_expected_links_obs_mtml.R R/varfreq_freq_logistic.R R/true_pairs_stsl.R R/prob_trans_mtsl.R R/optim_roc_threshold.R R/relR_samplesize_linkerr.R R/falsediscoveryrate.R R/obs_pairs_mtsl.R R/vartrack_samplesize_detect_cont.R R/vartrack_prob_prev.R R/exp_links.R R/translink_expected_links_obs.R R/true_pairs_mtsl.R R/relR_samplesize_ci.R R/relR_power_simulated.R R/obs_pairs_stsl.R R/get_optim_roc.R R/translink_prob_transmit_mtml.R R/gendist_roc_format.R R/translink_expected_links_obs_stsl.R R/prob_trans_stsl.R R/truediscoveryrate.R R/utils.R R/gendist_distribution.R R/samplesize.R inst/doc/L3_SensitivitySpecificity.R inst/doc/V2_SampleSizeCrossSectional.R inst/doc/V5_ProbDetectPeriodic.R inst/doc/V1_CoefficientDetectionBias.Rmd inst/doc/V5_ProbDetectPeriodic.Rmd inst/doc/L2_SampleSize.Rmd inst/doc/L1_FalseDiscoveryRate.Rmd inst/doc/V3_ProbCrossSectional.Rmd inst/doc/V6_IllustrativeExample.Rmd inst/doc/V4_SampleSizePeriodic.Rmd inst/doc/V3_ProbCrossSectional.R inst/doc/L1_FalseDiscoveryRate.R inst/doc/L3_SensitivitySpecificity.Rmd inst/doc/V2_SampleSizeCrossSectional.Rmd inst/doc/L2_SampleSize.R inst/doc/V1_CoefficientDetectionBias.R inst/doc/V4_SampleSizePeriodic.R inst/doc/L4_IllustrativeExamples.Rmd inst/doc/L4_IllustrativeExamples.R inst/doc/V6_IllustrativeExample.R tests/testthat.R tests/testthat/test-samplesize.R tests/testthat/test-translink_prob_transmit.R tests/testthat/test-vartrack_prob_detect.R tests/testthat/test-vartrack_prob_prev.R tests/testthat/test-gendist_sensspec_cutoff.R tests/testthat/test-varfreq_freq_logistic.R tests/testthat/test-translink_prob_transmit_stsl.R tests/testthat/test-translink_expected_links_true_mtsl.R tests/testthat/test-translink_expected_links_true.R tests/testthat/test-vartrack_prob_prev_xsect.R tests/testthat/test-vartrack_samplesize_detect_cont.R tests/testthat/test-prob_trans_mtsl.R tests/testthat/test-translink_prob_transmit_mtml.R tests/testthat/test-translink_expected_links_obs.R tests/testthat/test-prob_trans_stsl.R tests/testthat/test-vartrack_prob_detect_xsect.R tests/testthat/test-vartrack_samplesize_prev_xsect.R tests/testthat/test-translink_expected_links_true_mtml.R tests/testthat/test-obs_pairs_stsl.R tests/testthat/test-prob_trans_mtml.R tests/testthat/test-get_optim_roc.R tests/testthat/test-obs_pairs_mtsl.R tests/testthat/test-gendist_roc_format.R tests/testthat/test-translink_expected_links_true_stsl.R tests/testthat/test-truediscoveryrate.R tests/testthat/test-true_pairs.R tests/testthat/test-translink_tdr.R tests/testthat/test-exp_links.R tests/testthat/test-translink_fdr.R tests/testthat/test-vartrack_samplesize_detect_xsect.R tests/testthat/test-gen_dists.R tests/testthat/test-vartrack_samplesize_detect.R tests/testthat/test-sens_spec_roc.R tests/testthat/test-varfreq_cdf_logistic.R tests/testthat/test-varfreq_obs_freq.R tests/testthat/test-translink_samplesize.R tests/testthat/test-relR_power_simulated.R tests/testthat/test-true_pairs_mtml.R tests/testthat/test-translink_prob_transmit_mtsl.R tests/testthat/test-relR_samplesize_basic.R tests/testthat/test-translink_expected_links_obs_mtml.R tests/testthat/test-gendist_distribution.R tests/testthat/test-optim_roc_threshold.R tests/testthat/test-vartrack_samplesize_prev.R tests/testthat/test-obs_pairs_mtml.R tests/testthat/test-translink_expected_links_obs_stsl.R tests/testthat/test-falsediscoveryrate.R tests/testthat/test-true_pairs_stsl.R tests/testthat/test-relR_power.R tests/testthat/test-sens_spec_calc.R tests/testthat/test-varfreq_expected_mbias.R tests/testthat/test-translink_expected_links_obs_mtsl.R tests/testthat/test-vartrack_prob_detect_cont.R tests/testthat/test-true_pairs_mtsl.R tests/testthat/_snaps/obs_pairs_mtml.md tests/testthat/_snaps/true_pairs_mtsl.md tests/testthat/_snaps/true_pairs.md tests/testthat/_snaps/prob_trans_stsl.md tests/testthat/_snaps/true_pairs_mtml.md tests/testthat/_snaps/truediscoveryrate.md tests/testthat/_snaps/sens_spec_roc.md tests/testthat/_snaps/sens_spec_calc.md tests/testthat/_snaps/prob_trans_mtsl.md tests/testthat/_snaps/falsediscoveryrate.md tests/testthat/_snaps/obs_pairs_mtsl.md tests/testthat/_snaps/samplesize.md tests/testthat/_snaps/get_optim_roc.md tests/testthat/_snaps/obs_pairs_stsl.md tests/testthat/_snaps/exp_links.md tests/testthat/_snaps/true_pairs_stsl.md tests/testthat/_snaps/prob_trans_mtml.md tests/testthat/_snaps/gen_dists.md vignettes/V1_CoefficientDetectionBias.Rmd vignettes/V5_ProbDetectPeriodic.Rmd vignettes/L2_SampleSize.Rmd vignettes/L1_FalseDiscoveryRate.Rmd vignettes/V3_ProbCrossSectional.Rmd vignettes/V6_IllustrativeExample.Rmd vignettes/V4_SampleSizePeriodic.Rmd vignettes/L3_SensitivitySpecificity.Rmd vignettes/V2_SampleSizeCrossSectional.Rmd vignettes/L4_IllustrativeExamples.Rmd man/translink_expected_links_true_stsl.Rd man/relR_samplesize_opterr.Rd man/relR_samplesize.Rd man/prob_trans_stsl.Rd man/translink_expected_links_true_mtml.Rd man/gendist_distribution.Rd man/true_pairs.Rd man/gendist_roc_format.Rd man/falsediscoveryrate.Rd man/translink_fdr.Rd man/varfreq_obs_freq.Rd man/vartrack_samplesize_prev.Rd man/vartrack_samplesize_detect_cont.Rd man/vartrack_prob_prev.Rd man/vartrack_prob_prev_xsect.Rd man/prob_trans_mtml.Rd man/samplesize.Rd man/relR_samplesize_solve.Rd man/get_optim_roc.Rd man/relR_samplesize_ci.Rd man/relR_samplesize_simsolve.Rd man/translink_expected_links_obs.Rd man/vartrack_samplesize_detect.Rd man/translink_expected_links_obs_mtml.Rd man/vartrack_prob_detect_xsect.Rd man/phylosamp-package.Rd man/sens_spec_roc.Rd man/true_pairs_stsl.Rd man/relR_power_simulated.Rd man/vartrack_samplesize_detect_xsect.Rd man/true_pairs_mtsl.Rd man/obs_pairs_stsl.Rd man/relR_samplesize_linkerr.Rd man/prob_trans_mtsl.Rd man/translink_expected_links_true.Rd man/relR_samplesize_basic.Rd man/vartrack_samplesize_prev_xsect.Rd man/gendist_sensspec_cutoff.Rd man/sens_spec_calc.Rd man/vartrack_prob_detect.Rd man/varfreq_cdf_logistic.Rd man/exp_links.Rd man/varfreq_freq_logistic.Rd man/translink_expected_links_true_mtsl.Rd man/translink_prob_transmit_mtml.Rd man/translink_prob_transmit_mtsl.Rd man/obs_pairs_mtsl.Rd man/optim_roc_threshold.Rd man/translink_samplesize.Rd man/varfreq_expected_mbias.Rd man/translink_tdr.Rd man/vartrack_cod_ratio.Rd man/vartrack_prob_detect_cont.Rd man/translink_prob_transmit_stsl.Rd man/gen_dists.Rd man/relR_power.Rd man/true_pairs_mtml.Rd man/translink_expected_links_obs_mtsl.Rd man/obs_pairs_mtml.Rd man/truediscoveryrate.Rd man/translink_expected_links_obs_stsl.Rd man/genDistSim.Rd man/translink_prob_transmit.Rd