inst/doc/V4_SampleSizePeriodic.R

In phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

## ----setup, message=FALSE-----------------------------------------------------
library(phylosamp)

## ----calc_samplesize_detect_cont----------------------------------------------

c1_c2 <- vartrack_cod_ratio(phi_v1=0.975, phi_v2=0.95, gamma_v1=0.8, gamma_v2=0.6)
vartrack_samplesize_detect(prob=0.95, p_v1=0.01, p0_v1=3/10000, r_v1=0.1, 
                           omega=0.8, c_ratio=c1_c2, sampling_freq="cont")


## ----calc_samplesize_detect_cont2---------------------------------------------

c1_c2 <- vartrack_cod_ratio(phi_v1=0.975, phi_v2=0.95, gamma_v1=0.8, gamma_v2=0.6)
vartrack_samplesize_detect(prob=0.95, t=30, p0_v1=3/10000, r_v1=0.1, 
                           omega=0.8, c_ratio=c1_c2, sampling_freq="cont")