write_annotated: Write an annotated phylogenetic tree to a file
In phylotate: Phylogenies with Annotations

Description Usage Arguments Details Author(s) See Also

This function takes the given tree object and returns a string representing the tree in the requested format. The difference between the "newick" and "newick.named" formats is that the former uses only node numbers in its output, whereas the latter uses the tip labels (sanitized and deduplicated if necessary).

1	write_annotated(tree, filename, format="nexus")

`tree`	a phylogentic tree, with optional annotations
`filename`	a file to write no
`format`	a format specifier; either `"nexus"`, `"newick"`, or `"newick.named"`

The tree object should be either a "phylo" or "multiPhylo" object. It may optionally be augmented with annotations, as described in the documentation for the parse_annotated function.

Daniel Beer dlbeer@gmail.com

parse_annotated, print_annotated, read_annotated

phylotate documentation built on June 30, 2019, 1:01 a.m.