phytotools: Phytoplankton Production Tools

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Fits PE and RLC data to one of a four published PE models. Simulates incident irradiance as a function of time and space. Calculates phytoplankton production by transposing modeled PE or RLC data to a water column with a user-defined theoretical in-situ irradiance field.

Author
Greg M. Silsbe, Sairah Y. Malkin
Date of publication
2015-02-14 01:08:08
Maintainer
Greg Silsbe <gsilsbe@gmail.com>
License
GPL-2
Version
1.0

View on CRAN

Man pages

fitEP
Fit PE or RLC data to Eilers and Peeters 1988
fitJP
Fit PE or RLC data to Jassby and Platt 1976
fitPGH
Fit PE or RLC data to Platt, Gallegos and Harrison 1980
fitWebb
Fit PE data to Webb et al. 1974
incident
Simulate photosynthetic active radiaton (PAR)
phytoprod
Calculates phytoplantkon production.
phytotools-package
Phytoplankton Production Tools
reflectance
Computes surface reflectance
rlcs
Sample rapid light curves

Files in this package

phytotools
phytotools/NAMESPACE
phytotools/data
phytotools/data/rlcs.rda
phytotools/R
phytotools/R/reflectance.R
phytotools/R/fitJP.R
phytotools/R/phytoprod.R
phytotools/R/fitEP.R
phytotools/R/incident.R
phytotools/R/fitPGH.R
phytotools/R/fitWebb.R
phytotools/MD5
phytotools/DESCRIPTION
phytotools/man
phytotools/man/incident.Rd
phytotools/man/phytoprod.Rd
phytotools/man/fitPGH.Rd
phytotools/man/fitEP.Rd
phytotools/man/reflectance.Rd
phytotools/man/phytotools-package.Rd
phytotools/man/fitWebb.Rd
phytotools/man/rlcs.Rd
phytotools/man/fitJP.Rd