plater: Read, Tidy, and Display Data from Microtiter Plates

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Tools for interacting with data from experiments done in microtiter plates. Easily read in plate-shaped data and convert it to tidy format, combine plate-shaped data with tidy data, and view tidy data in plate shape.

Author
Sean Hughes [aut, cre]
Date of publication
2016-10-06 21:55:01
Maintainer
Sean Hughes <smhughes@uw.edu>
License
GPL-3
Version
1.0.0
URLs

View on CRAN

Man pages

add_plate
Read a plater-formatted file and combine it with an existing...
check_plater_format
Check whether a file is in plater format.
plater
Tools to Make it Easy to Work with Microtiter Plate-Shaped...
read_plate
Read a plater-formatted file and turn it into a tidy data...
read_plates
Read multiple plater-formatted files and combine result into...
view_plate
Displays the data in the form of a microtiter plate.

Files in this package

plater
plater/inst
plater/inst/extdata
plater/inst/extdata/example-2-part-B.csv
plater/inst/extdata/more-bacteria.csv
plater/inst/extdata/example-1.csv
plater/inst/extdata/example-2-part-A.csv
plater/inst/doc
plater/inst/doc/plater-basics.html
plater/inst/doc/Thumbs.db
plater/inst/doc/plater-basics.R
plater/inst/doc/plater-basics.Rmd
plater/tests
plater/tests/testthat.R
plater/tests/testthat
plater/tests/testthat/test-plate_utilities.R
plater/tests/testthat/testData
plater/tests/testthat/testData/12
plater/tests/testthat/testData/12/onePlateOneBlankRow.csv
plater/tests/testthat/testData/12/missingPlateNames.csv
plater/tests/testthat/testData/12/validPlate.csv
plater/tests/testthat/testData/12/missingMiddleRow.csv
plater/tests/testthat/testData/12/nonEmptyTopLeft.csv
plater/tests/testthat/testData/12/missingRowLabels.csv
plater/tests/testthat/testData/12/twoPlatesOneBlankRow.csv
plater/tests/testthat/testData/12/oneWell.csv
plater/tests/testthat/testData/12/allWellIds.csv
plater/tests/testthat/testData/12/wellIdsAndEmptyWells.csv
plater/tests/testthat/testData/12/read_plates-validOne.csv
plater/tests/testthat/testData/12/missingColumnsWithCorrectTitles.csv
plater/tests/testthat/testData/12/validPlateWithWhiteSpaceInRowNames.csv
plater/tests/testthat/testData/12/oneExtraColumn.csv
plater/tests/testthat/testData/12/incorrectRowLabels.csv
plater/tests/testthat/testData/12/read_plates-validTwo.csv
plater/tests/testthat/testData/12/dontAddWhiteSpace.csv
plater/tests/testthat/testData/12/oneExtraRow.csv
plater/tests/testthat/testData/12/weirdCharacters.csv
plater/tests/testthat/testData/12/twoPlatesNoBlankRow.csv
plater/tests/testthat/testData/12/oneFullOnePartEmpty.csv
plater/tests/testthat/testData/12/missingBottomRow.csv
plater/tests/testthat/testData/12/twoPlatesTwoBlankRows.csv
plater/tests/testthat/testData/12/onePlateTwoBlankRows.csv
plater/tests/testthat/testData/12/missingRightColumn.csv
plater/tests/testthat/testData/48
plater/tests/testthat/testData/48/onePlateOneBlankRow.csv
plater/tests/testthat/testData/48/missingPlateNames.csv
plater/tests/testthat/testData/48/validPlate.csv
plater/tests/testthat/testData/48/missingMiddleRow.csv
plater/tests/testthat/testData/48/nonEmptyTopLeft.csv
plater/tests/testthat/testData/48/missingRowLabels.csv
plater/tests/testthat/testData/48/twoPlatesOneBlankRow.csv
plater/tests/testthat/testData/48/oneWell.csv
plater/tests/testthat/testData/48/allWellIds.csv
plater/tests/testthat/testData/48/wellIdsAndEmptyWells.csv
plater/tests/testthat/testData/48/read_plates-validOne.csv
plater/tests/testthat/testData/48/missingColumnsWithCorrectTitles.csv
plater/tests/testthat/testData/48/validPlateWithWhiteSpaceInRowNames.csv
plater/tests/testthat/testData/48/oneExtraColumn.csv
plater/tests/testthat/testData/48/incorrectRowLabels.csv
plater/tests/testthat/testData/48/read_plates-validTwo.csv
plater/tests/testthat/testData/48/dontAddWhiteSpace.csv
plater/tests/testthat/testData/48/oneExtraRow.csv
plater/tests/testthat/testData/48/weirdCharacters.csv
plater/tests/testthat/testData/48/twoPlatesNoBlankRow.csv
plater/tests/testthat/testData/48/oneFullOnePartEmpty.csv
plater/tests/testthat/testData/48/missingBottomRow.csv
plater/tests/testthat/testData/48/twoPlatesTwoBlankRows.csv
plater/tests/testthat/testData/48/onePlateTwoBlankRows.csv
plater/tests/testthat/testData/48/missingRightColumn.csv
plater/tests/testthat/testData/384
plater/tests/testthat/testData/384/onePlateOneBlankRow.csv
plater/tests/testthat/testData/384/missingPlateNames.csv
plater/tests/testthat/testData/384/validPlate.csv
plater/tests/testthat/testData/384/missingMiddleRow.csv
plater/tests/testthat/testData/384/nonEmptyTopLeft.csv
plater/tests/testthat/testData/384/missingRowLabels.csv
plater/tests/testthat/testData/384/twoPlatesOneBlankRow.csv
plater/tests/testthat/testData/384/oneWell.csv
plater/tests/testthat/testData/384/allWellIds.csv
plater/tests/testthat/testData/384/wellIdsAndEmptyWells.csv
plater/tests/testthat/testData/384/read_plates-validOne.csv
plater/tests/testthat/testData/384/missingColumnsWithCorrectTitles.csv
plater/tests/testthat/testData/384/validPlateWithWhiteSpaceInRowNames.csv
plater/tests/testthat/testData/384/oneExtraColumn.csv
plater/tests/testthat/testData/384/incorrectRowLabels.csv
plater/tests/testthat/testData/384/read_plates-validTwo.csv
plater/tests/testthat/testData/384/dontAddWhiteSpace.csv
plater/tests/testthat/testData/384/oneExtraRow.csv
plater/tests/testthat/testData/384/weirdCharacters.csv
plater/tests/testthat/testData/384/twoPlatesNoBlankRow.csv
plater/tests/testthat/testData/384/oneFullOnePartEmpty.csv
plater/tests/testthat/testData/384/missingBottomRow.csv
plater/tests/testthat/testData/384/twoPlatesTwoBlankRows.csv
plater/tests/testthat/testData/384/onePlateTwoBlankRows.csv
plater/tests/testthat/testData/384/missingRightColumn.csv
plater/tests/testthat/testData/file-path-tests
plater/tests/testthat/testData/file-path-tests/good_extension.csv
plater/tests/testthat/testData/file-path-tests/bad_extension
plater/tests/testthat/testData/file-path-tests/good_extension_3.CSV
plater/tests/testthat/testData/file-path-tests/good_extension_2.CsV
plater/tests/testthat/testData/96
plater/tests/testthat/testData/96/onePlateOneBlankRow.csv
plater/tests/testthat/testData/96/missingPlateNames.csv
plater/tests/testthat/testData/96/validPlate.csv
plater/tests/testthat/testData/96/missingMiddleRow.csv
plater/tests/testthat/testData/96/nonEmptyTopLeft.csv
plater/tests/testthat/testData/96/missingRowLabels.csv
plater/tests/testthat/testData/96/twoPlatesOneBlankRow.csv
plater/tests/testthat/testData/96/oneWell.csv
plater/tests/testthat/testData/96/allWellIds.csv
plater/tests/testthat/testData/96/wellIdsAndEmptyWells.csv
plater/tests/testthat/testData/96/read_plates-validOne.csv
plater/tests/testthat/testData/96/missingColumnsWithCorrectTitles.csv
plater/tests/testthat/testData/96/validPlateWithWhiteSpaceInRowNames.csv
plater/tests/testthat/testData/96/oneExtraColumn.csv
plater/tests/testthat/testData/96/incorrectRowLabels.csv
plater/tests/testthat/testData/96/read_plates-validTwo.csv
plater/tests/testthat/testData/96/dontAddWhiteSpace.csv
plater/tests/testthat/testData/96/oneExtraRow.csv
plater/tests/testthat/testData/96/weirdCharacters.csv
plater/tests/testthat/testData/96/twoPlatesNoBlankRow.csv
plater/tests/testthat/testData/96/oneFullOnePartEmpty.csv
plater/tests/testthat/testData/96/missingBottomRow.csv
plater/tests/testthat/testData/96/twoPlatesTwoBlankRows.csv
plater/tests/testthat/testData/96/onePlateTwoBlankRows.csv
plater/tests/testthat/testData/96/missingRightColumn.csv
plater/tests/testthat/testData/24
plater/tests/testthat/testData/24/onePlateOneBlankRow.csv
plater/tests/testthat/testData/24/missingPlateNames.csv
plater/tests/testthat/testData/24/validPlate.csv
plater/tests/testthat/testData/24/missingMiddleRow.csv
plater/tests/testthat/testData/24/nonEmptyTopLeft.csv
plater/tests/testthat/testData/24/missingRowLabels.csv
plater/tests/testthat/testData/24/twoPlatesOneBlankRow.csv
plater/tests/testthat/testData/24/oneWell.csv
plater/tests/testthat/testData/24/allWellIds.csv
plater/tests/testthat/testData/24/wellIdsAndEmptyWells.csv
plater/tests/testthat/testData/24/read_plates-validOne.csv
plater/tests/testthat/testData/24/missingColumnsWithCorrectTitles.csv
plater/tests/testthat/testData/24/validPlateWithWhiteSpaceInRowNames.csv
plater/tests/testthat/testData/24/oneExtraColumn.csv
plater/tests/testthat/testData/24/incorrectRowLabels.csv
plater/tests/testthat/testData/24/read_plates-validTwo.csv
plater/tests/testthat/testData/24/dontAddWhiteSpace.csv
plater/tests/testthat/testData/24/oneExtraRow.csv
plater/tests/testthat/testData/24/weirdCharacters.csv
plater/tests/testthat/testData/24/twoPlatesNoBlankRow.csv
plater/tests/testthat/testData/24/oneFullOnePartEmpty.csv
plater/tests/testthat/testData/24/missingBottomRow.csv
plater/tests/testthat/testData/24/twoPlatesTwoBlankRows.csv
plater/tests/testthat/testData/24/onePlateTwoBlankRows.csv
plater/tests/testthat/testData/24/missingRightColumn.csv
plater/tests/testthat/test-view_plate.R
plater/tests/testthat/test-add_plate.R
plater/tests/testthat/test-read_plates.R
plater/tests/testthat/test-read_plate.R
plater/tests/testthat/test-convert_plate_to_column.R
plater/NAMESPACE
plater/NEWS.md
plater/R
plater/R/check_plater_format.R
plater/R/read_plate.R
plater/R/read_plates.R
plater/R/view_plate.R
plater/R/plate_utilities.R
plater/R/add_plate.R
plater/R/plater.R
plater/R/convert_plate_to_column.R
plater/vignettes
plater/vignettes/plater-format-image.png
plater/vignettes/Thumbs.db
plater/vignettes/plater-basics.Rmd
plater/MD5
plater/build
plater/build/vignette.rds
plater/DESCRIPTION
plater/man
plater/man/check_plater_format.Rd
plater/man/plater.Rd
plater/man/read_plates.Rd
plater/man/view_plate.Rd
plater/man/add_plate.Rd
plater/man/read_plate.Rd