plotmo: Plot a Model's Response and Residuals
Version 3.3.3

Plot model surfaces for a wide variety of models using partial dependence plots and other techniques. Also plot model residuals and other information on the model.

Browse man pages Browse package API and functions Browse package files

AuthorStephen Milborrow
Date of publication2017-05-05 21:42:15 UTC
MaintainerStephen Milborrow <milbo@sonic.net>
LicenseGPL-3
Version3.3.3
URL http://www.milbo.users.sonic.net
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("plotmo")

Man pages

plot_gbm: Plot a gbm model
plot_glmnet: Plot a glmnet model
plotmo: Plot a model's response over a range of predictor values
plotmo.misc: Ignore
plotres: Plot the residuals of a regression model

Functions

add.formals.to.drop Source code
add.s.line Source code
annotate.rlambda Source code
any1 Source code
apply.inverse.func Source code
apply.jitter Source code
as.char Source code
auto.caption Source code
blockify.degree1.frame Source code
blockify.degree2.frame Source code
call.as.char Source code
call.dots Source code
call.earth.modsel Source code
call.plot Source code
callargs Source code
callers.name Source code
canonical.drop Source code
cat0 Source code
check Source code
check.boolean Source code
check.character.index Source code
check.classname Source code
check.df.numeric.or.logical Source code
check.do.par Source code
check.grid.class Source code
check.grid.levels.arg Source code
check.index Man page Source code
check.integer.scalar Source code
check.is.caret.train.object Source code
check.level.arg Source code
check.logical.index Source code
check.naked Source code
check.no.na.in.mat Source code
check.numeric.index Source code
check.numeric.scalar Source code
check.regex Source code
check.that.most.are.positive Source code
check.vec Source code
cleanup.x.or.y Source code
colname Source code
convert.drop.to.regex Source code
convert.glm.response Source code
convert.glm.response.factor Source code
convert.glm.response.two.column Source code
degree1.partdep.yhat Source code
degree2.partdep.yhat Source code
deprefix Source code
deprefix.aux Source code
derive.main Source code
derive.xlab Source code
derive.ylab Source code
describe.dot Source code
do.call.trace Source code
do.degree2.auto.par Source code
do.par Source code
do.par.dots Source code
do.persp.auto.par Source code
dota Source code
dotd Source code
dotindex Source code
dotindex.aux Source code
dots.as.char Source code
dots.used.err Source code
draw.bad.leverage.as.star Source code
draw.caption Source code
draw.cook.levels Source code
draw.degree1.numeric.rug Source code
draw.density.along.the.bottom Source code
draw.fac.intervals Source code
draw.func Source code
draw.grid Source code
draw.numeric.intervals Source code
draw.oob.curve Source code
draw.oof.meanfit Source code
draw.percents.on.top Source code
draw.pint.resids Source code
draw.quantiles.on.right.side Source code
draw.resids.info Source code
draw.response.sites Source code
draw.rlm.line Source code
draw.smooth Source code
draw.smooth1 Source code
drop.args.prefixed.with.drop Source code
drop.unnamed.dots Source code
elegend Source code
ensure.dots.present Source code
environment.as.char Source code
errmsg.for.get.x.or.y Source code
eval.dotlist Source code
eval.trace Source code
expand.dotnames Source code
expand.drop Source code
fix.lim Source code
fname.from.call Source code
form.pairs Source code
format.err.field Source code
formula.as.char.with.check Source code
gbm.bag.fraction Source code
gbm.cv.error Source code
gbm.cv.folds Source code
gbm.legend Source code
gbm.n.trees Source code
gbm.oobag.improve Source code
gbm.short.distribution.name Source code
gbm.top.labels Source code
gbm.train.error Source code
gbm.train.fraction Source code
gbm.valid.error Source code
gen.colnames Source code
get.all.levs Source code
get.all.pairs Source code
get.and.check.subset Source code
get.argn Source code
get.argn.aux Source code
get.beta Source code
get.caption Source code
get.coef.col Source code
get.contour.levs Source code
get.data.for.model.frame Source code
get.data.from.object.call.field Source code
get.degree1.xframe Source code
get.degree1.xgrid Source code
get.degree1.xlim Source code
get.degree2.xframe Source code
get.degree2.xgrid Source code
get.degree2.xranges Source code
get.fixed.grid.lev Source code
get.gbm.ylab Source code
get.gbm.ylim Source code
get.id.indices Source code
get.id.n Source code
get.iname Source code
get.iresponse Source code
get.isubset Source code
get.jitter Source code
get.las Source code
get.lda.yhat Source code
get.len Source code
get.level Source code
get.level.shades Source code
get.mean.rsq Source code
get.model.env Source code
get.model.formula Source code
get.model.frame Source code
get.ngrid1 Source code
get.ngrid2 Source code
get.object.x.or.y Source code
get.partdep.x Source code
get.plotres.data Source code
get.pred.names Source code
get.pt.col Source code
get.resid.scale Source code
get.resids.xlim Source code
get.resids.ylim Source code
get.resp.name.from.metadata Source code
get.rsq Source code
get.smooth.col Source code
get.specified.col.and.force.numeric Source code
get.unique.xyvals Source code
get.ux.list Source code
get.versus.info Source code
get.weighted.rsq Source code
get.x.or.y Source code
get.x.or.y.from.model.frame Source code
get.ylim Source code
grepany Source code
handle.nonvector.vars Source code
hatvalues1 Source code
higher.call.args Source code
higher.caller.to.deprefix Source code
ife Source code
imatch.choices Source code
init.fname Source code
init.gbm.plot Source code
init.global.data Source code
init.prefix Source code
is.degree.specified Source code
is.dot Source code
is.errmsg Source code
is.good.data Source code
is.integral Source code
is.naked Source code
is.specified Source code
is.try.err Source code
lighten Source code
list.as.char Source code
make.static.list Source code
match.arg1 Source code
match.call2 Source code
match.choices Source code
matchmult Source code
maybe.deprecate.arg Source code
maybe.grid Source code
maybe.smooth Source code
merge.formals Source code
merge.list Source code
model.env Source code
my.center Source code
my.data.frame Source code
my.fixed.point Source code
my.log10 Source code
naken Source code
naken.formula.string Source code
nlines Source code
nlines.in.plotres.main Source code
nlines.in.w1.main Source code
nonzeroCoef Source code
order.C5.0.vars.on.importance Source code
order.GBMFit.vars.on.importance Source code
order.args Source code
order.gbm.vars.on.importance Source code
order.randomForest.vars.on.importance Source code
paste.c Source code
paste.collapse Source code
paste.drop Source code
paste.trunc Source code
pastef Source code
plot.contour Source code
plot.degree1 Source code
plot.degree2 Source code
plot.image Source code
plot.persp Source code
plot_gbm Man page Source code
plot_glmnet Man page Source code
plot_w1 Source code
plotmo Man page Source code
plotmo.convert.na.nresponse Man page Source code
plotmo.convert.na.nresponse.default Source code
plotmo.convert.na.nresponse.rq Source code
plotmo.convert.na.nresponse.rqs Source code
plotmo.pairs Man page Source code
plotmo.pairs.C5.0 Source code
plotmo.pairs.GBMFit Source code
plotmo.pairs.default Man page Source code
plotmo.pairs.from.term.labels Source code
plotmo.pairs.gbm Source code
plotmo.pairs.randomForest Source code
plotmo.pairs.rpart Source code
plotmo.pint Man page Source code
plotmo.pint.default Source code
plotmo.pint.earth Source code
plotmo.pint.gam Source code
plotmo.pint.glm Source code
plotmo.pint.lm Source code
plotmo.pint.quantregForest Source code
plotmo.pint.rq Source code
plotmo.pint.rqs Source code
plotmo.predict Man page Source code
plotmo.predict.GBMFit Source code
plotmo.predict.bagging Source code
plotmo.predict.biglm Source code
plotmo.predict.boosting Source code
plotmo.predict.bruto Source code
plotmo.predict.cosso Source code
plotmo.predict.cv.glmnet Source code
plotmo.predict.default Source code
plotmo.predict.defaultm Source code
plotmo.predict.gbm Source code
plotmo.predict.glmnet Source code
plotmo.predict.glmnet.formula Source code
plotmo.predict.lars Source code
plotmo.predict.lda Source code
plotmo.predict.list Source code
plotmo.predict.mvr Source code
plotmo.predict.nn Source code
plotmo.predict.qda Source code
plotmo.predict.quantregForest Source code
plotmo.predict.rpart Source code
plotmo.predict.rq Source code
plotmo.predict.rqs Source code
plotmo.predict.svm Source code
plotmo.prolog Man page Source code
plotmo.prolog.C5.0 Source code
plotmo.prolog.GBMFit Source code
plotmo.prolog.cv.glmnet Source code
plotmo.prolog.default Source code
plotmo.prolog.gbm Source code
plotmo.prolog.glmnet Source code
plotmo.prolog.xgb.Booster Source code
plotmo.residtype Man page Source code
plotmo.residtype.default Source code
plotmo.residtype.rpart Source code
plotmo.residtype.train Source code
plotmo.singles Man page Source code
plotmo.singles.C5.0 Source code
plotmo.singles.GBMFit Source code
plotmo.singles.default Man page Source code
plotmo.singles.gbm Source code
plotmo.singles.glmnet Source code
plotmo.singles.randomForest Source code
plotmo.singles.rpart Source code
plotmo.type Man page Source code
plotmo.type.bruto Source code
plotmo.type.cosso Source code
plotmo.type.default Source code
plotmo.type.fda Source code
plotmo.type.knn3 Source code
plotmo.type.lars Source code
plotmo.type.lda Source code
plotmo.type.nnet Source code
plotmo.type.qda Source code
plotmo.type.rpart Source code
plotmo.type.train Source code
plotmo.type.tree Source code
plotmo.type.varmod Source code
plotmo.x Man page Source code
plotmo.x.GBMFit Source code
plotmo.x.default Source code
plotmo.x.gbm Source code
plotmo.x.gbm.aux Source code
plotmo.x.mars Source code
plotmo.x.varmod Source code
plotmo.y Man page Source code
plotmo.y.GBMFit Source code
plotmo.y.default Man page Source code
plotmo.y.gbm Source code
plotmo.y.gbm.aux Source code
plotmo.y.lognet Source code
plotmo.y.mrelnet Source code
plotmo.y.multnet Source code
plotmo.y.varmod Source code
plotmo_bx Source code
plotmo_cum Man page Source code
plotmo_fitted Man page Source code
plotmo_meta Source code
plotmo_nresponse Man page Source code
plotmo_pairs Source code
plotmo_pint Source code
plotmo_predict Man page Source code
plotmo_prolog Man page Source code
plotmo_qq Source code
plotmo_resids Source code
plotmo_residtype Source code
plotmo_resplevs Man page Source code
plotmo_response Man page Source code
plotmo_rinfo Man page Source code
plotmo_rsq Man page Source code
plotmo_rsq1 Source code
plotmo_singles Source code
plotmo_standardizescale Man page Source code
plotmo_type Man page Source code
plotmo_x Source code
plotmo_y Man page Source code
plotres Man page Source code
plotresids Source code
points.or.text Source code
polygon1 Source code
possible.biglm.warning Source code
possible.plotres.legend Source code
predict.nn Source code
print.colnames Source code
print.first.few.elements.of.vector Source code
print.grid.values Source code
print.with.strings.quoted Source code
print_summary Source code
printcall Source code
printdots Source code
printf Source code
printf.wrap Source code
process.argname Source code
process.exact Source code
process.formula Source code
process.my.call.for.caption Source code
process.new Source code
process.y Source code
pt.cex Source code
quote.deparse Source code
quote.with.c Source code
quotify Source code
quotify.short Source code
quotify.trunc Source code
range1 Source code
recycle Source code
repl Source code
replace.brackets Source code
response.from.xy.model Source code
right.labs Source code
safe.colnames Source code
short.deparse Source code
sort.unique Source code
stop.if.dots Source code
stop0 Source code
stopf Source code
stopif.unnamed.dot Source code
stopifnot.expanded.dotnames.unique Source code
stopifnot.identifier Source code
stopifnot.string Source code
strip.deparse Source code
strip.space Source code
strip.space.collapse Source code
text.on.white Source code
to.logical Source code
top.axis Source code
trace.after.dropkeep Source code
trace.data Source code
trace.prolog Source code
trace1 Source code
trace2 Source code
trans.resids Source code
trans.versus Source code
trunc.deparse Source code
try.eval Source code
unquote Source code
versus.err Source code
vertical.line Source code
warn.if.dots Source code
warn.if.not.all.finite Source code
warnf Source code
warning0 Source code
which.err Source code
which.min1 Source code

Files

inst
inst/slowtests
inst/slowtests/test.plotmo.x.bat
inst/slowtests/test.fac.R
inst/slowtests/test.glmnet.R
inst/slowtests/test.caret.bat
inst/slowtests/test.plotmo.x.Rout.save
inst/slowtests/test.plotres.R
inst/slowtests/test.plotmo.dots.bat
inst/slowtests/test.plotmo.x.R
inst/slowtests/test.linmod.R
inst/slowtests/test.fac.Rout.save
inst/slowtests/test.center.R
inst/slowtests/test.linmod.Rout.save
inst/slowtests/linmod.milbo.tutorial.R
inst/slowtests/test.printcall.Rout.save
inst/slowtests/test.partdep.bat
inst/slowtests/test.emma.Rout.save
inst/slowtests/linmod.R
inst/slowtests/test.non.earth.R
inst/slowtests/test.ltut.R
inst/slowtests/test.plotmo.bat
inst/slowtests/test.center.bat
inst/slowtests/make.bat
inst/slowtests/test.plotmo.Rout.save
inst/slowtests/test.plotmo3.bat
inst/slowtests/test.non.earth.Rout.save
inst/slowtests/test.gbm.bat
inst/slowtests/test.plotmo.R
inst/slowtests/test.plotmo.args.bat
inst/slowtests/test.plotmo.dots.R
inst/slowtests/test.dots.Rout.save
inst/slowtests/test.plotmo3.Rout.save
inst/slowtests/test.gbm.R
inst/slowtests/test.partdep.Rout.save
inst/slowtests/test.plotmo.args.R
inst/slowtests/test.plotmo3.R
inst/slowtests/test.printcall.bat
inst/slowtests/test.glmnet.bat
inst/slowtests/linmod.leisch.tutorial.R
inst/slowtests/test.plotres.bat
inst/slowtests/test.printcall.R
inst/slowtests/test.non.earth.bat
inst/slowtests/test.center.Rout.save
inst/slowtests/test.emma.R
inst/slowtests/test.ltut.bat
inst/slowtests/test.dots.bat
inst/slowtests/test.plotmo.dots.Rout.save
inst/slowtests/test.partdep.R
inst/slowtests/test.plotmo.args.Rout.save
inst/slowtests/test.linmod.bat
inst/slowtests/test.glmnet.Rout.save
inst/slowtests/test.c50.bat
inst/slowtests/README.txt
inst/slowtests/test.c50.R
inst/slowtests/test.gbm.Rout.save
inst/slowtests/test.emma.bat
inst/slowtests/test.ltut.Rout.save
inst/slowtests/test.caret.R
inst/slowtests/test.plotres.Rout.save
inst/slowtests/test.fac.bat
inst/slowtests/test.caret.Rout.save
inst/slowtests/test.c50.Rout.save
inst/slowtests/test.dots.R
inst/doc
inst/doc/index.html
inst/doc/plotmo-notes.pdf
inst/doc/modguide.pdf
inst/doc/plotres-notes.pdf
tests
tests/test.plotmo.Rout.save
tests/test.plotmo.R
NAMESPACE
NEWS
R
R/xy.R
R/plotcum.R
R/rpart.R
R/xgboost.R
R/bx.R
R/predict.R
R/gbm.backcompat.R
R/glmnet.R
R/plot_gbm.R
R/plotmo.R
R/check.index.R
R/c50.R
R/fitted.R
R/dotlib.R
R/meta.R
R/printcall.R
R/methods.R
R/type.R
R/quantreg.R
R/predict.nn.R
R/plotres.R
R/gbm.R
R/as.char.R
R/plot_glmnet.R
R/prolog.R
R/singles.R
R/plotresids.R
R/lib.R
R/w1.R
R/dot.R
R/do.par.R
R/plotqq.R
R/grid.R
R/caret.R
R/elegend.R
R/response.R
R/call.dots.R
R/residuals.R
R/partdep.R
R/stop.if.dots.R
R/pint.R
MD5
DESCRIPTION
man
man/plotmo.Rd
man/plot_gbm.Rd
man/plotmo.misc.Rd
man/plot_glmnet.Rd
man/plotres.Rd
.Rinstignore
plotmo documentation built on May 19, 2017, 4:42 p.m.