pmc: Phylogenetic Monte Carlo
Version 1.0.2

Monte Carlo based model choice for applied phylogenetics of continuous traits. Method described in Carl Boettiger, Graham Coop, Peter Ralph (2012) Is your phylogeny informative? Measuring the power of comparative methods, Evolution 66 (7) 2240-51. doi:10.1111/j.1558-5646.2011.01574.x.

AuthorCarl Boettiger [aut, cre]
Date of publication2016-12-05 18:28:47
MaintainerCarl Boettiger <cboettig@gmail.com>
LicenseCC0
Version1.0.2
URL https://github.com/cboettig/pmc
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pmc")

Getting started

README.md
pmc tutorial

Popular man pages

anoles: The anoles data set
pmc: pmc
pmc_fit: Fit any model used in PMC
simulate.gfit: simulate gfit
tree: The phylogeny for the anoles data set
update.gfit: update gfit
See all...

All man pages Function index File listing

Man pages

anoles: The anoles data set
pmc: pmc
pmc_fit: Fit any model used in PMC
simulate.gfit: simulate gfit
tree: The phylogeny for the anoles data set
update.gfit: update gfit

Functions

anoles Man page
format_sims Source code
plot.pmc Source code
pmc Man page Source code
pmc-package Man page
pmc_fit Man page Source code
simulate.gfit Man page Source code
tidy_pars Source code
tree Man page
update.gfit Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/pmc_tutorial.R
inst/doc/pmc_tutorial.Rmd
inst/doc/pmc_tutorial.html
tests
tests/testthat.R
tests/testthat
tests/testthat/test_pmc.R
tests/testthat/test_ouch.R
NAMESPACE
NEWS
data
data/anoles.rda
R
R/data_documentation.R
R/geiger.R
R/template-package.r
R/pmc.R
vignettes
vignettes/pmc_tutorial.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/pmc.Rd
man/anoles.Rd
man/pmc_fit.Rd
man/update.gfit.Rd
man/simulate.gfit.Rd
man/tree.Rd
pmc documentation built on May 19, 2017, 12:56 p.m.

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