pmc: Phylogenetic Monte Carlo

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Monte Carlo based model choice for applied phylogenetics of continuous traits. Method described in Carl Boettiger, Graham Coop, Peter Ralph (2012) Is your phylogeny informative? Measuring the power of comparative methods, Evolution 66 (7) 2240-51. doi:10.1111/j.1558-5646.2011.01574.x.

Author
Carl Boettiger [aut, cre]
Date of publication
2016-12-05 18:28:47
Maintainer
Carl Boettiger <cboettig@gmail.com>
License
CC0
Version
1.0.2
URLs

View on CRAN

Man pages

anoles
The anoles data set
pmc
pmc
pmc_fit
Fit any model used in PMC
simulate.gfit
simulate gfit
tree
The phylogeny for the anoles data set
update.gfit
update gfit

Files in this package

pmc
pmc/inst
pmc/inst/CITATION
pmc/inst/doc
pmc/inst/doc/pmc_tutorial.R
pmc/inst/doc/pmc_tutorial.Rmd
pmc/inst/doc/pmc_tutorial.html
pmc/tests
pmc/tests/testthat.R
pmc/tests/testthat
pmc/tests/testthat/test_pmc.R
pmc/tests/testthat/test_ouch.R
pmc/NAMESPACE
pmc/NEWS
pmc/data
pmc/data/anoles.rda
pmc/R
pmc/R/data_documentation.R
pmc/R/geiger.R
pmc/R/template-package.r
pmc/R/pmc.R
pmc/vignettes
pmc/vignettes/pmc_tutorial.Rmd
pmc/README.md
pmc/MD5
pmc/build
pmc/build/vignette.rds
pmc/DESCRIPTION
pmc/man
pmc/man/pmc.Rd
pmc/man/anoles.Rd
pmc/man/pmc_fit.Rd
pmc/man/update.gfit.Rd
pmc/man/simulate.gfit.Rd
pmc/man/tree.Rd