pop: A Flexible Syntax for Population Dynamic Modelling

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Population dynamic models underpin a range of analyses and applications in ecology and epidemiology. The various approaches for analysing population dynamics models (MPMs, IPMs, ODEs, POMPs, PVA) each require the model to be defined in a different way. This makes it difficult to combine different modelling approaches and data types to solve a given problem. 'pop' aims to provide a flexible and easy to use common interface for constructing population dynamic models and enabling to them to be fitted and analysed in lots of different ways.

Author
Nick Golding
Date of publication
2016-06-07 06:26:35
Maintainer
Nick Golding <nick.golding.research@gmail.com>
License
MIT + file LICENSE
Version
0.1

View on CRAN

Man pages

as.transfun
create a transition function
dispersal
dispersal transfun
dynamic
dynamic objects
landscape
landscape objects
parameters
get and set parameters
pop
pop: A Flexible Syntax for Population Dynamic Modelling
probability
probability transfun
projection
Deterministic projection
rate
rate transfun
simulation
Stochastic Simulation
transfun
transfun objects
transition
transition objects

Files in this package

pop
pop/tests
pop/tests/testthat
pop/tests/testthat/test_landscape_class.R
pop/tests/testthat/Rplots.pdf
pop/tests/testthat/test_transfun_constructors.R
pop/tests/testthat/test_transition_class.R
pop/tests/testthat/test_dynamic_class.R
pop/tests/testthat/test_deterministic_analyses.R
pop/tests/testthat/test_transfun_class.R
pop/tests/testthat/test_stochastic_analyses.R
pop/tests/test-all.R
pop/NAMESPACE
pop/R
pop/R/transition-class.R
pop/R/transfun_dispersal.R
pop/R/projection-class.R
pop/R/simulation-class.R
pop/R/transfun-class.R
pop/R/transfun_rate.R
pop/R/dynamic-class.R
pop/R/landscape-class.R
pop/R/pop.R
pop/R/parameters-method.R
pop/R/core_internal.R
pop/R/transfun_probability.R
pop/MD5
pop/DESCRIPTION
pop/man
pop/man/pop.Rd
pop/man/simulation.Rd
pop/man/rate.Rd
pop/man/projection.Rd
pop/man/dynamic.Rd
pop/man/dispersal.Rd
pop/man/parameters.Rd
pop/man/transfun.Rd
pop/man/probability.Rd
pop/man/transition.Rd
pop/man/landscape.Rd
pop/man/as.transfun.Rd
pop/LICENSE