popkin: Estimate Kinship and FST under Arbitrary Population Structure

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

Package details

AuthorAlejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>), John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
MaintainerAlejandro Ochoa <[email protected]>
LicenseGPL-3
Version1.3.0
URL https://github.com/StoreyLab/popkin/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("popkin")

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popkin documentation built on Dec. 18, 2019, 1:50 a.m.