potts: Markov Chain Monte Carlo for Potts Models

Do Markov chain Monte Carlo (MCMC) simulation of Potts models (Potts, 1952, <https://doi.org/10.1017/S0305004100027419>), which are the multi-color generalization of Ising models (so, as as special case, also simulates Ising models). Use the Swendsen-Wang algorithm (Swendsen and Wang, 1987, <https://doi.org/10.1103/PhysRevLett.58.86>) so MCMC is fast. Do maximum composite likelihood estimation of parameters (Besag, 1975, <https://doi.org/10.2307/2987782>, Lindsay, 1988, <https://doi.org/10.1090/conm/080>).

Install the latest version of this package by entering the following in R:
install.packages("potts")
AuthorCharles J. Geyer <charlie@stat.umn.edu> and Leif Johnson <ltjohnson@google.com>
Date of publication2017-03-16 22:58:12 UTC
MaintainerCharles J. Geyer <charlie@stat.umn.edu>
LicenseGPL (>= 2)
Version0.5-7
http://www.stat.umn.edu/geyer/mcmc/

View on CRAN

Functions

calc_t Man page
calc_t_full Man page
calc_t_innergrid Man page
composite.ll Man page
fourpixel Man page
fourpixel.nonoverlap Man page
generate_t_cache Man page
genfourbyfour Man page
genfourpixel Man page
gengridcache Man page
gensingleton Man page
genthreebythree Man page
gentwopixel Man page
gr.composite.ll Man page
image.raw Man page
inspectPotts Man page
ninepixel.nonoverlap Man page
packPotts Man page
potts Man page
potts.potts Man page
potts.raw Man page
singleton Man page
sixteenpixel.nonoverlap Man page
twopixel Man page
twopixel.nonoverlap Man page
unpackPotts Man page

Files

inst
inst/doc
inst/doc/cll.pdf
inst/doc/cll.R
inst/doc/cll.Rnw
tests
tests/debug-free.Rout.save
tests/potts.Rout.save
tests/debug.Rout.save
tests/outfun.R tests/debug.R tests/debug-free.R tests/pack.R
tests/cll.Rout.save
tests/debug-cond.Rout.save
tests/debug-cond.R tests/cll.R
tests/outfun.Rout.save
tests/pack.Rout.save
tests/potts.R
src
src/Makevars
src/potts.h
src/potts.c
src/init.c
NAMESPACE
NEWS
R
R/packPotts.R R/image.raw.R R/calct.R R/cll.R R/potts.R R/cachet.R
vignettes
vignettes/cll.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/potts.Rd man/packPotts.Rd man/cll.Rd man/image.raw.Rd man/cachet.Rd man/calct.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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