README.md

ppendemic

Lifecycle:
experimental CRAN
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…El libro rojo de las plantas endémicas del Perú constituye, en este aspecto una herramienta fundamental para determinar las medidas necesarias para la conservación de la flora peruana. - Kember Mejía Carhuanca

The goal of ppendemic is to provide access to The red book of endemic plants of Peru data.

Installation:

You can install:

the most recent officially-released version from CRAN with:

install.packages("ppendemic")

the latest development version from GitHub with:

# install.packages("remotes")
remotes::install_github("PaulESantos/ppendemic")

About the data

Data were published and made available by the Revista Peruana de Biología in volume 13 and number 2 available here, on 2006. Edited by Blanca León et al.

Examples:

pep_check, the basic function of ppendemic:

library(tidyverse)
library(ppendemic)

The function can be executed on a vector with the names of the species to be verified.

spp <-  c("Clethra cuneata", "Miconia setulosa", "Weinmannia fagaroides", "Symplocos quitensis", "Miconia alpina", "Persea ruizii", "Myrsine andina", "Symplocos baehnii", "Polylepis pauta")

pep_check(spp)
#> [1] "not endemic" "not endemic" "not endemic" "not endemic" "endemic"    
#> [6] "not endemic" "not endemic" "endemic"     "not endemic"

Or in a tibble variable:

df <- tibble::tibble(sppe = c("Clethra cuneata", "Miconia setulosa",
                          "Weinmannia fagaroides", "Symplocos quitensis",
                          "Miconia alpina", "Persea ruizii",
                          "Myrsine andina", "Symplocos baehnii",
                          "Polylepis pauta"))

df
#> # A tibble: 9 x 1
#>   sppe                 
#>   <chr>                
#> 1 Clethra cuneata      
#> 2 Miconia setulosa     
#> 3 Weinmannia fagaroides
#> 4 Symplocos quitensis  
#> 5 Miconia alpina       
#> 6 Persea ruizii        
#> 7 Myrsine andina       
#> 8 Symplocos baehnii    
#> 9 Polylepis pauta

df %>% 
  mutate(endemic = pep_check(sppe))
#> # A tibble: 9 x 2
#>   sppe                  endemic    
#>   <chr>                 <chr>      
#> 1 Clethra cuneata       not endemic
#> 2 Miconia setulosa      not endemic
#> 3 Weinmannia fagaroides not endemic
#> 4 Symplocos quitensis   not endemic
#> 5 Miconia alpina        endemic    
#> 6 Persea ruizii         not endemic
#> 7 Myrsine andina        not endemic
#> 8 Symplocos baehnii     endemic    
#> 9 Polylepis pauta       not endemic

Departmental registry map:

pep_regdep_map("Symplocos baehnii")

Citation

To cite the ppendemic package, please use:

citation("ppendemic")
#> 
#> To cite ppendemic in publications use:
#> 
#>   Santos-Andrade PE, Vilca-Bustamante LL (2021). ppendemic: The red
#>   book of endemic plants of Peru data. R package version 0.1.0.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {ppendemic: The red book of endemic plants of Peru data},
#>     author = {Paul Efren Santos Andrade and Lucely L. Vilca Bustamante},
#>     year = {2021},
#>     note = {R package version 0.1.0},
#>     url = {https://github.com/PaulESantos/ppendemic},
#>   }

References

Data originally published in:



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ppendemic documentation built on Feb. 19, 2021, 1:06 a.m.