README.md
In ppendemic: The Red Book of Endemic Plants of Peru

ppendemic

…El libro rojo de las plantas endémicas del Perú constituye, en este aspecto una herramienta fundamental para determinar las medidas necesarias para la conservación de la flora peruana. - Kember Mejía Carhuanca

The goal of ppendemic is to provide access to The red book of endemic plants of Peru data.

You can install:

the most recent officially-released version from CRAN with:

install.packages("ppendemic")

the latest development version from GitHub with:

# install.packages("remotes")
remotes::install_github("PaulESantos/ppendemic")

Data were published and made available by the Revista Peruana de Biología in volume 13 and number 2 available here, on 2006. Edited by Blanca León et al.

pep_check, the basic function of ppendemic:

library(tidyverse)
library(ppendemic)

The function can be executed on a vector with the names of the species to be verified.

spp <-  c("Clethra cuneata", "Miconia setulosa", "Weinmannia fagaroides", "Symplocos quitensis", "Miconia alpina", "Persea ruizii", "Myrsine andina", "Symplocos baehnii", "Polylepis pauta")

pep_check(spp)
#> [1] "not endemic" "not endemic" "not endemic" "not endemic" "endemic"    
#> [6] "not endemic" "not endemic" "endemic"     "not endemic"

Or in a tibble variable:

df <- tibble::tibble(sppe = c("Clethra cuneata", "Miconia setulosa",
                          "Weinmannia fagaroides", "Symplocos quitensis",
                          "Miconia alpina", "Persea ruizii",
                          "Myrsine andina", "Symplocos baehnii",
                          "Polylepis pauta"))

df
#> # A tibble: 9 x 1
#>   sppe                 
#>   <chr>                
#> 1 Clethra cuneata      
#> 2 Miconia setulosa     
#> 3 Weinmannia fagaroides
#> 4 Symplocos quitensis  
#> 5 Miconia alpina       
#> 6 Persea ruizii        
#> 7 Myrsine andina       
#> 8 Symplocos baehnii    
#> 9 Polylepis pauta

df %>% 
  mutate(endemic = pep_check(sppe))
#> # A tibble: 9 x 2
#>   sppe                  endemic    
#>   <chr>                 <chr>      
#> 1 Clethra cuneata       not endemic
#> 2 Miconia setulosa      not endemic
#> 3 Weinmannia fagaroides not endemic
#> 4 Symplocos quitensis   not endemic
#> 5 Miconia alpina        endemic    
#> 6 Persea ruizii         not endemic
#> 7 Myrsine andina        not endemic
#> 8 Symplocos baehnii     endemic    
#> 9 Polylepis pauta       not endemic

Departmental registry map:

pep_regdep_map("Symplocos baehnii")

To cite the ppendemic package, please use:

citation("ppendemic")
#> 
#> To cite ppendemic in publications use:
#> 
#>   Santos-Andrade PE, Vilca-Bustamante LL (2021). ppendemic: The red
#>   book of endemic plants of Peru data. R package version 0.1.0.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {ppendemic: The red book of endemic plants of Peru data},
#>     author = {Paul Efren Santos Andrade and Lucely L. Vilca Bustamante},
#>     year = {2021},
#>     note = {R package version 0.1.0},
#>     url = {https://github.com/PaulESantos/ppendemic},
#>   }

Data originally published in:

León, B., J. Roque, C. Ulloa Ulloa, N. C. A. Pitman, P. M. Jørgensen & A. Cano Echevarría. 2006 [2007]. El Libro Rojo de las Plantas Endémicas del Perú. Revista Peruana Biol. 13(núm. 2 especial): 1s–971s.Here