pro: Point-Process Response Model for Optogenetics
Version 0.1.1

Optogenetics is a new tool to study neuronal circuits that have been genetically modified to allow stimulation by flashes of light. This package implements the methodological framework, Point-process Response model for Optogenetics (PRO), for analyzing data from these experiments. This method provides explicit nonlinear transformations to link the flash point-process with the spiking point-process. Such response functions can be used to provide important and interpretable scientific insights into the properties of the biophysical process that governs neural spiking in response to optogenetic stimulation.

AuthorXi (Rossi) LUO with contributions from Dylan Small and Vikaas Sohal
Date of publication2015-09-17 22:50:12
MaintainerXi (Rossi) LUO <xi.rossi.luo@gmail.com>
LicenseGPL-2
Version0.1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pro")

Popular man pages

model.pro: Model matrix for point-process responses
pro: Fit the PRO model
sim.lif: Simulate optogenetic stimulation on a leaky-integrate-fire...
See all...

All man pages Function index File listing

Man pages

model.pro: Model matrix for point-process responses
pro: Fit the PRO model
sim.lif: Simulate optogenetic stimulation on a leaky-integrate-fire...

Functions

model.pro Man page Source code
pro Man page Source code
sim.lif Man page Source code

Files

NAMESPACE
R
R/pro.R
R/model.pro.R
R/sim.lif.R
MD5
DESCRIPTION
ChangeLog
man
man/model.pro.Rd
man/pro.Rd
man/sim.lif.Rd
pro documentation built on May 19, 2017, 11:47 p.m.

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