cumulate.projections: Compute cumulative projections

In projections: Project Future Case Incidence

Compute cumulative projections

Description

cumulate is an S3 generic to compute cumulative numbers defined in the package incidence. The method for projections objects turns predicted incidences into cumulative incidences over time.

Usage

## S3 method for class 'projections'
cumulate(x)

Arguments

x	A projections object.

Author(s)

Thibaut Jombart [e-mail]

See Also

The project function to generate the projections objects.

Examples

if (require(distcrete) &&
    require(incidence)) {

  ## simulate basic epicurve
  dat <- c(0, 2, 2, 3, 3, 5, 5, 5, 6, 6, 6, 6)
  i <- incidence(dat)


  ## example with a function for SI
  si <- distcrete("gamma", interval = 1L,
                  shape = 1.5,
                  scale = 2, w = 0)
  set.seed(1)
  pred_1 <- project(i, runif(100, 0.8, 1.9), si, n_days = 30)
  plot_1 <- plot(pred_1)

  ## cumulative predictions
  pred_1_cum <- cumulate(pred_1)
  pred_1_cum
  plot(pred_1_cum)
}

projections documentation built on March 31, 2023, 7:18 p.m.