hmm_read: hmm_read
In protHMM: Protein Feature Extraction from Profile Hidden Markov Models
hmm_read R Documentation
hmm_read
Description
Reads in the amino acid emission frequency columns of a profile hidden markov model matrix
and converts each position to frequencies.
Usage
hmm_read(hmm)
Arguments
hmm
The name of a profile hidden markov model file.
Value
A 20 x L matrix, in which L is the sequence length.
Examples
h<- hmm_read(system.file("extdata", "1DLHA2-7", package="protHMM"))
protHMM documentation built on July 9, 2023, 6:10 p.m.
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| hmm_read | R Documentation |
hmm_read
Description
Reads in the amino acid emission frequency columns of a profile hidden markov model matrix and converts each position to frequencies.
Usage
hmm_read(hmm)
Arguments
hmm |
The name of a profile hidden markov model file. |
Value
A 20 x L matrix, in which L is the sequence length.
Examples
h<- hmm_read(system.file("extdata", "1DLHA2-7", package="protHMM"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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