This package provides functions to identify the optimal solution that maximizes numbers of detectable differentiated proteins from a multi-stage clinical proteomic study.

Author | Irene SL Zeng |

Date of publication | 2013-01-04 12:04:40 |

Maintainer | Irene Zeng <zeng@stat.auckland.ac.nz> |

License | GPL-3 |

Version | 2.0 |

**calculate.cost:** Function to calculate the total cost of the multi-stage...

**calculate.n3:** A function to calculate the stage III sample size based on...

**do.one.experiment:** Simulation function for calculate the expected number of...

**do.one.experiment.t:** Simulation function for calculating the expected number of...

**Ftest.Ttest:** A function to perform the paired t test for each protein, and...

**genseq.appr:** A sub function to generate the sub solution space

**genseq.group:** A sub function to generate the sub solution space

**genseq.single:** A sub function to generate the sub solution space

**optim.two.stage.appr:** Optimize numbers of discoveries by using an approximated...

**optim.two.stage.group:** Optimization of the design parameters in the discovery ,...

**optim.two.stage.single:** Optimization of the number of discoveries from a multistage...

**ots.env:** assign the current working environment

**power:** The power function used in the optim.two.stage.single...

**power.appr:** The power function used in the optim.two.stage.appr function

**power.group.cost:** Derive the averaged estimated costs of stage II and III and...

**power.single.cost:** Derive the averaged estimated costs of stage II and III and...

**power.t:** The power function used in the optim.two.stage.single...

**proteomic.optim.two.stage.v2.0-package:** Optimization of a multi stage proteomic study

**Ttest:** The function to calculate the p values for each protein in...

proteomicdesign

proteomicdesign/MD5

proteomicdesign/R

proteomicdesign/R/power.single.cost.R
proteomicdesign/R/power.group.cost.R
proteomicdesign/R/optim.two.stage.single.R
proteomicdesign/R/optim.two.stage.group.R
proteomicdesign/R/optim.two.stage.appr.R
proteomicdesign/NAMESPACE

proteomicdesign/man

proteomicdesign/man/Ttest.Rd
proteomicdesign/man/proteomic.optim.two.stage.v2.0-package.Rd
proteomicdesign/man/power.t.Rd
proteomicdesign/man/power.single.cost.Rd
proteomicdesign/man/power.Rd
proteomicdesign/man/power.group.cost.Rd
proteomicdesign/man/power.appr.Rd
proteomicdesign/man/ots.env.Rd
proteomicdesign/man/optim.two.stage.single.Rd
proteomicdesign/man/optim.two.stage.group.Rd
proteomicdesign/man/optim.two.stage.appr.Rd
proteomicdesign/man/genseq.single.Rd
proteomicdesign/man/genseq.group.Rd
proteomicdesign/man/genseq.appr.Rd
proteomicdesign/man/Ftest.Ttest.Rd
proteomicdesign/man/do.one.experiment.t.Rd
proteomicdesign/man/do.one.experiment.Rd
proteomicdesign/man/calculate.n3.Rd
proteomicdesign/man/calculate.cost.Rd
proteomicdesign/DESCRIPTION

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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