ptest: Periodicity Tests in Short Time Series

Implements p-value computations using an approximation to the cumulative distribution function for a variety of tests for periodicity. These tests include harmonic regression tests with normal and double exponential errors as well as modifications of Fisher's g test. An accompanying vignette illustrates the application of these tests.

AuthorYuanhao Lai and A.I. McLeod
Date of publication2016-11-12 21:41:37
MaintainerA.I. McLeod <aimcleod@uwo.ca>
LicenseGPL (>= 2)
Version1.0-8

View on CRAN

Man pages

alpha: Microarray time series experiment for yeast cell cycle from...

B1: Benchmark set B1

B2: Benchmark set B2

B3: Benchmark set B3

Cc: Microarray time series experiment for Caulobacter crescentus...

cdc15: Microarray time series experiment for yeast cell cycle from...

cdc28: Microarray time series experiment for yeast cell cycle from...

FisherGTest: Fisher's g test

fitHReg: Fits Three Parameter Harmonic Regression

GetFitExtendedG: Compute the extended Fisher's g test statistic

GetFitFisherG: Compute the Fisher's g test statistic

GetFitHReg: Compute loglikelihood ratio test statistic

GetFitHRegL1: Compute loglikelihood ratio test statistic under the laplace...

GetFitRobustG: Compute the Robust g test statistic

pFisherg: The cumulative distribution function for Fisher'g

pgram: Periodogram computation

predictRSR: Quantile computation for the RSR model

ptestg: Test short time series for periodicity based on periodograms

ptestReg: Test short time series for periodicity with maximum...

pvalueRSR: P-value computation for the RSR model

rankSpectrum: The robust rank-based spectral

simAR1: Simulate AR(1) series

simHReg: Simulate harmonic regression models

simLaplace: Simulate series with the Laplace distribution

tableEg: The result for the RSR method with respect to the extended...

tablegEven: The result for the RSR method with respect to the Fisher'g...

tablegOdd: The result for the RSR method with respect to the Fisher'g...

tableRegL1Even: The result for the RSR method with respect to the laplace...

tableRegL1Odd: The result for the RSR method with respect to the laplace...

tableRegLs: The result for the RSR method with respect to the normal...

tableRgAn: The result for the RSR method with respect to the robust g...

tableRgEn: The result for the RSR method with respect to the robust g...

Files in this package

ptest
ptest/inst
ptest/inst/doc
ptest/inst/doc/Introduction_to_the_ptest_package.html
ptest/inst/doc/Introduction_to_the_ptest_package.Rmd
ptest/inst/doc/Introduction_to_the_ptest_package.R
ptest/src
ptest/src/RegSS.c
ptest/src/nrutil.h
ptest/src/stdafx.h
ptest/src/GetHReg.c
ptest/src/nrutil.c
ptest/src/gaussj.c
ptest/NAMESPACE
ptest/data
ptest/data/tableRegL1Even.rda
ptest/data/alpha.rda
ptest/data/B1.rda
ptest/data/tableRgEn.rda
ptest/data/cdc15.rda
ptest/data/tablegEven.rda
ptest/data/tableEg.rda
ptest/data/cdc28.rda
ptest/data/tableRegLs.rda
ptest/data/B3.rda
ptest/data/tablegOdd.rda
ptest/data/tableRgAn.rda
ptest/data/B2.rda
ptest/data/Cc.rda
ptest/data/tableRegL1Odd.rda
ptest/R
ptest/R/pvalueRSR.R ptest/R/simLaplace.R ptest/R/GetFitRobustG.R ptest/R/FisherGTest.R ptest/R/GetFitFisherG.R ptest/R/fitHReg.R ptest/R/pFisherg.R ptest/R/ptest-internal.R ptest/R/GetFitExtendedG.R ptest/R/data.R ptest/R/GetFitHRegL1.R ptest/R/GetFitHReg.R ptest/R/ptestReg.R ptest/R/pgram.R ptest/R/simAR1.R ptest/R/ptestg.R ptest/R/simHReg.R
ptest/vignettes
ptest/vignettes/Introduction_to_the_ptest_package.Rmd
ptest/vignettes/ptest.bib
ptest/MD5
ptest/build
ptest/build/vignette.rds
ptest/DESCRIPTION
ptest/man
ptest/man/tableRegL1Even.Rd ptest/man/Cc.Rd ptest/man/B1.Rd ptest/man/cdc28.Rd ptest/man/pFisherg.Rd ptest/man/simLaplace.Rd ptest/man/pgram.Rd ptest/man/B3.Rd ptest/man/GetFitHRegL1.Rd ptest/man/predictRSR.Rd ptest/man/simAR1.Rd ptest/man/fitHReg.Rd ptest/man/tablegEven.Rd ptest/man/GetFitRobustG.Rd ptest/man/FisherGTest.Rd ptest/man/pvalueRSR.Rd ptest/man/cdc15.Rd ptest/man/ptestReg.Rd ptest/man/GetFitFisherG.Rd ptest/man/tablegOdd.Rd ptest/man/alpha.Rd ptest/man/rankSpectrum.Rd ptest/man/ptestg.Rd ptest/man/GetFitHReg.Rd ptest/man/GetFitExtendedG.Rd ptest/man/B2.Rd ptest/man/tableRgAn.Rd ptest/man/tableEg.Rd ptest/man/tableRegL1Odd.Rd ptest/man/tableRgEn.Rd ptest/man/simHReg.Rd ptest/man/tableRegLs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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