ptest: Periodicity Tests in Short Time Series
Version 1.0-8

Implements p-value computations using an approximation to the cumulative distribution function for a variety of tests for periodicity. These tests include harmonic regression tests with normal and double exponential errors as well as modifications of Fisher's g test. An accompanying vignette illustrates the application of these tests.

AuthorYuanhao Lai and A.I. McLeod
Date of publication2016-11-12 21:41:37
MaintainerA.I. McLeod <aimcleod@uwo.ca>
LicenseGPL (>= 2)
Version1.0-8
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ptest")

Getting started

Introduction to the ptest package"

Popular man pages

FisherGTest: Fisher's g test
fitHReg: Fits Three Parameter Harmonic Regression
GetFitHReg: Compute loglikelihood ratio test statistic
ptestg: Test short time series for periodicity based on periodograms
pvalueRSR: P-value computation for the RSR model
simLaplace: Simulate series with the Laplace distribution
tableRegLs: The result for the RSR method with respect to the normal...
See all...

All man pages Function index File listing

Man pages

alpha: Microarray time series experiment for yeast cell cycle from...
B1: Benchmark set B1
B2: Benchmark set B2
B3: Benchmark set B3
Cc: Microarray time series experiment for Caulobacter crescentus...
cdc15: Microarray time series experiment for yeast cell cycle from...
cdc28: Microarray time series experiment for yeast cell cycle from...
FisherGTest: Fisher's g test
fitHReg: Fits Three Parameter Harmonic Regression
GetFitExtendedG: Compute the extended Fisher's g test statistic
GetFitFisherG: Compute the Fisher's g test statistic
GetFitHReg: Compute loglikelihood ratio test statistic
GetFitHRegL1: Compute loglikelihood ratio test statistic under the laplace...
GetFitRobustG: Compute the Robust g test statistic
pFisherg: The cumulative distribution function for Fisher'g
pgram: Periodogram computation
predictRSR: Quantile computation for the RSR model
ptestg: Test short time series for periodicity based on periodograms
ptestReg: Test short time series for periodicity with maximum...
pvalueRSR: P-value computation for the RSR model
rankSpectrum: The robust rank-based spectral
simAR1: Simulate AR(1) series
simHReg: Simulate harmonic regression models
simLaplace: Simulate series with the Laplace distribution
tableEg: The result for the RSR method with respect to the extended...
tablegEven: The result for the RSR method with respect to the Fisher'g...
tablegOdd: The result for the RSR method with respect to the Fisher'g...
tableRegL1Even: The result for the RSR method with respect to the laplace...
tableRegL1Odd: The result for the RSR method with respect to the laplace...
tableRegLs: The result for the RSR method with respect to the normal...
tableRgAn: The result for the RSR method with respect to the robust g...
tableRgEn: The result for the RSR method with respect to the robust g...

Functions

B1 Man page
B2 Man page
B3 Man page
Cc Man page
FisherGTest Man page Source code
GetFitExtendedG Man page Source code
GetFitFisherG Man page Source code
GetFitHReg Man page Source code
GetFitHRegL1 Man page Source code
GetFitRobustG Man page Source code
alpha Man page
cdc15 Man page
cdc28 Man page
fitHReg Man page Source code
onAttach Source code
pFisherg Man page Source code
pgram Man page Source code
predictRSR Man page Source code
ptestReg Man page Source code
ptestg Man page Source code
pvalueRSR Man page Source code
rankSpectrum Man page Source code
simAR1 Man page Source code
simHReg Man page Source code
simLaplace Man page Source code
tableEg Man page
tableRegL1Even Man page
tableRegL1Odd Man page
tableRegLs Man page
tableRgAn Man page
tableRgEn Man page
tablegEven Man page
tablegOdd Man page

Files

inst
inst/doc
inst/doc/Introduction_to_the_ptest_package.html
inst/doc/Introduction_to_the_ptest_package.Rmd
inst/doc/Introduction_to_the_ptest_package.R
src
src/RegSS.c
src/nrutil.h
src/stdafx.h
src/GetHReg.c
src/nrutil.c
src/gaussj.c
NAMESPACE
data
data/tableRegL1Even.rda
data/alpha.rda
data/B1.rda
data/tableRgEn.rda
data/cdc15.rda
data/tablegEven.rda
data/tableEg.rda
data/cdc28.rda
data/tableRegLs.rda
data/B3.rda
data/tablegOdd.rda
data/tableRgAn.rda
data/B2.rda
data/Cc.rda
data/tableRegL1Odd.rda
R
R/pvalueRSR.R
R/simLaplace.R
R/GetFitRobustG.R
R/FisherGTest.R
R/GetFitFisherG.R
R/fitHReg.R
R/pFisherg.R
R/ptest-internal.R
R/GetFitExtendedG.R
R/data.R
R/GetFitHRegL1.R
R/GetFitHReg.R
R/ptestReg.R
R/pgram.R
R/simAR1.R
R/ptestg.R
R/simHReg.R
vignettes
vignettes/Introduction_to_the_ptest_package.Rmd
vignettes/ptest.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/tableRegL1Even.Rd
man/Cc.Rd
man/B1.Rd
man/cdc28.Rd
man/pFisherg.Rd
man/simLaplace.Rd
man/pgram.Rd
man/B3.Rd
man/GetFitHRegL1.Rd
man/predictRSR.Rd
man/simAR1.Rd
man/fitHReg.Rd
man/tablegEven.Rd
man/GetFitRobustG.Rd
man/FisherGTest.Rd
man/pvalueRSR.Rd
man/cdc15.Rd
man/ptestReg.Rd
man/GetFitFisherG.Rd
man/tablegOdd.Rd
man/alpha.Rd
man/rankSpectrum.Rd
man/ptestg.Rd
man/GetFitHReg.Rd
man/GetFitExtendedG.Rd
man/B2.Rd
man/tableRgAn.Rd
man/tableEg.Rd
man/tableRegL1Odd.Rd
man/tableRgEn.Rd
man/simHReg.Rd
man/tableRegLs.Rd
ptest documentation built on May 19, 2017, 5:06 p.m.

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