ptest: Periodicity Tests in Short Time Series

Implements p-value computations using an approximation to the cumulative distribution function for a variety of tests for periodicity. These tests include harmonic regression tests with normal and double exponential errors as well as modifications of Fisher's g test. An accompanying vignette illustrates the application of these tests.

AuthorYuanhao Lai and A.I. McLeod
Date of publication2016-11-12 21:41:37
MaintainerA.I. McLeod <aimcleod@uwo.ca>
LicenseGPL (>= 2)
Version1.0-8

View on CRAN

Man pages

alpha: Microarray time series experiment for yeast cell cycle from...

B1: Benchmark set B1

B2: Benchmark set B2

B3: Benchmark set B3

Cc: Microarray time series experiment for Caulobacter crescentus...

cdc15: Microarray time series experiment for yeast cell cycle from...

cdc28: Microarray time series experiment for yeast cell cycle from...

FisherGTest: Fisher's g test

fitHReg: Fits Three Parameter Harmonic Regression

GetFitExtendedG: Compute the extended Fisher's g test statistic

GetFitFisherG: Compute the Fisher's g test statistic

GetFitHReg: Compute loglikelihood ratio test statistic

GetFitHRegL1: Compute loglikelihood ratio test statistic under the laplace...

GetFitRobustG: Compute the Robust g test statistic

pFisherg: The cumulative distribution function for Fisher'g

pgram: Periodogram computation

predictRSR: Quantile computation for the RSR model

ptestg: Test short time series for periodicity based on periodograms

ptestReg: Test short time series for periodicity with maximum...

pvalueRSR: P-value computation for the RSR model

rankSpectrum: The robust rank-based spectral

simAR1: Simulate AR(1) series

simHReg: Simulate harmonic regression models

simLaplace: Simulate series with the Laplace distribution

tableEg: The result for the RSR method with respect to the extended...

tablegEven: The result for the RSR method with respect to the Fisher'g...

tablegOdd: The result for the RSR method with respect to the Fisher'g...

tableRegL1Even: The result for the RSR method with respect to the laplace...

tableRegL1Odd: The result for the RSR method with respect to the laplace...

tableRegLs: The result for the RSR method with respect to the normal...

tableRgAn: The result for the RSR method with respect to the robust g...

tableRgEn: The result for the RSR method with respect to the robust g...

Functions

alpha Man page
B1 Man page
B2 Man page
B3 Man page
Cc Man page
cdc15 Man page
cdc28 Man page
FisherGTest Man page
fitHReg Man page
GetFitExtendedG Man page
GetFitFisherG Man page
GetFitHReg Man page
GetFitHRegL1 Man page
GetFitRobustG Man page
pFisherg Man page
pgram Man page
predictRSR Man page
ptestg Man page
ptestReg Man page
pvalueRSR Man page
rankSpectrum Man page
simAR1 Man page
simHReg Man page
simLaplace Man page
tableEg Man page
tablegEven Man page
tablegOdd Man page
tableRegL1Even Man page
tableRegL1Odd Man page
tableRegLs Man page
tableRgAn Man page
tableRgEn Man page

Files

ptest
ptest/inst
ptest/inst/doc
ptest/inst/doc/Introduction_to_the_ptest_package.html
ptest/inst/doc/Introduction_to_the_ptest_package.Rmd
ptest/inst/doc/Introduction_to_the_ptest_package.R
ptest/src
ptest/src/RegSS.c
ptest/src/nrutil.h
ptest/src/stdafx.h
ptest/src/GetHReg.c
ptest/src/nrutil.c
ptest/src/gaussj.c
ptest/NAMESPACE
ptest/data
ptest/data/tableRegL1Even.rda
ptest/data/alpha.rda
ptest/data/B1.rda
ptest/data/tableRgEn.rda
ptest/data/cdc15.rda
ptest/data/tablegEven.rda
ptest/data/tableEg.rda
ptest/data/cdc28.rda
ptest/data/tableRegLs.rda
ptest/data/B3.rda
ptest/data/tablegOdd.rda
ptest/data/tableRgAn.rda
ptest/data/B2.rda
ptest/data/Cc.rda
ptest/data/tableRegL1Odd.rda
ptest/R
ptest/R/pvalueRSR.R ptest/R/simLaplace.R ptest/R/GetFitRobustG.R ptest/R/FisherGTest.R ptest/R/GetFitFisherG.R ptest/R/fitHReg.R ptest/R/pFisherg.R ptest/R/ptest-internal.R ptest/R/GetFitExtendedG.R ptest/R/data.R ptest/R/GetFitHRegL1.R ptest/R/GetFitHReg.R ptest/R/ptestReg.R ptest/R/pgram.R ptest/R/simAR1.R ptest/R/ptestg.R ptest/R/simHReg.R
ptest/vignettes
ptest/vignettes/Introduction_to_the_ptest_package.Rmd
ptest/vignettes/ptest.bib
ptest/MD5
ptest/build
ptest/build/vignette.rds
ptest/DESCRIPTION
ptest/man
ptest/man/tableRegL1Even.Rd ptest/man/Cc.Rd ptest/man/B1.Rd ptest/man/cdc28.Rd ptest/man/pFisherg.Rd ptest/man/simLaplace.Rd ptest/man/pgram.Rd ptest/man/B3.Rd ptest/man/GetFitHRegL1.Rd ptest/man/predictRSR.Rd ptest/man/simAR1.Rd ptest/man/fitHReg.Rd ptest/man/tablegEven.Rd ptest/man/GetFitRobustG.Rd ptest/man/FisherGTest.Rd ptest/man/pvalueRSR.Rd ptest/man/cdc15.Rd ptest/man/ptestReg.Rd ptest/man/GetFitFisherG.Rd ptest/man/tablegOdd.Rd ptest/man/alpha.Rd ptest/man/rankSpectrum.Rd ptest/man/ptestg.Rd ptest/man/GetFitHReg.Rd ptest/man/GetFitExtendedG.Rd ptest/man/B2.Rd ptest/man/tableRgAn.Rd ptest/man/tableEg.Rd ptest/man/tableRegL1Odd.Rd ptest/man/tableRgEn.Rd ptest/man/simHReg.Rd ptest/man/tableRegLs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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