prevsymbol_fn: To extract the sentences containing Previous symbols of HGNC...

In pubmed.mineR: Text Mining of PubMed Abstracts

Description

prevsymbol_fn will return the sentences containing previous symbols of the genes from the abstracts using HGNC data.

Usage

prevsymbol_fn(genes, data, abs, filename, terms)

Arguments

genes	genes is output of gene_atomization, or a table containing HGNC gene symbols in first column with its frequency in second column.
data	data is HGNC data table with all 49 features (columns) available from the web site https://www.genenames.org/
abs	abs an S4 object of class Abstracts.
filename	filename specify the name of output file
terms	terms second query term to be searched in the same sentence (co-occurrence) of abstracts.

Value

It returns a text file containing gene symbol with corresponding previous symbols.

Author(s)

S.Ramachandran

See Also

names_fn, official_fn

Examples

## Not run: 
prevsymbol_fn(genes, data, diabetes_abs, "prevsym", c("diabetic nephropathy", "DN"))

## End(Not run)

pubmed.mineR documentation built on Nov. 26, 2021, 5:11 p.m.