pvclust: Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling

An implementation of multiscale bootstrap resampling for assessing the uncertainty in hierarchical cluster analysis. It provides AU (approximately unbiased) p-value as well as BP (bootstrap probability) value for each cluster in a dendrogram.

Author
Ryota Suzuki <suzuki@ef-prime.com>, Hidetoshi Shimodaira <shimo@sigmath.es.osaka-u.ac.jp>
Date of publication
2015-10-23 16:23:16
Maintainer
Ryota Suzuki <suzuki@ef-prime.com>
License
GPL (>= 2)
Version
2.0-0
URLs

View on CRAN

Man pages

lung
DNA Microarray Data of Lung Tumors
msfit
Curve Fitting for Multiscale Bootstrap Resampling
msplot
Drawing the Results of Curve Fitting for Pvclust Object
plot.pvclust
Draws Dendrogram with P-values for Pvclust Object
print.pvclust
Print Function for Pvclust Object
pvclust
Calculating P-values for Hierchical Clustering
pvpick
Find Clusters with High/Low P-values
seplot
Diagnostic Plot for Standard Error of p-value

Files in this package

pvclust
pvclust/NAMESPACE
pvclust/data
pvclust/data/lung.RData
pvclust/R
pvclust/R/pvclust.R
pvclust/R/pvclust-internal.R
pvclust/MD5
pvclust/DESCRIPTION
pvclust/man
pvclust/man/msfit.Rd
pvclust/man/print.pvclust.Rd
pvclust/man/seplot.Rd
pvclust/man/msplot.Rd
pvclust/man/lung.Rd
pvclust/man/pvpick.Rd
pvclust/man/pvclust.Rd
pvclust/man/plot.pvclust.Rd