pweight: P-Value Weighting

This R package contains open source implementations of several p-value weighting methods, including Spjotvoll, exponential and Bayes weights. These are methods for improving power in multiple testing via the use of prior information.

Author
Edgar Dobriban [aut, cre], Kristen Fortney [aut]
Date of publication
2015-07-29 11:08:38
Maintainer
Edgar Dobriban <dobriban@stanford.edu>
License
GPL-3
Version
0.0.1
URLs

View on CRAN

Man pages

bayes_weights
Bayes p-value weights
c_1
Find the location of the smaller maximum of the generic term...
exp_weights
Exponential p-value weights
find_crossing
find the crossing point of the two competing maxima
g_fun
compute the dual constraint function: 1 if lambda <= l_prime,...
iGWAS
informed Genome-Wide Association Study
pweight
pweight: P-value weighting in multiple testing.
spjotvoll_weights
Spjotvoll p-value weights

Files in this package

pweight
pweight/inst
pweight/inst/doc
pweight/inst/doc/pweight-basics.Rmd
pweight/inst/doc/iGWAS-DataExample.html
pweight/inst/doc/iGWAS-DataExample.Rmd
pweight/inst/doc/pweight-basics.R
pweight/inst/doc/pweight-basics.html
pweight/inst/doc/iGWAS-DataExample.R
pweight/tests
pweight/tests/spjotvoll_weights_tests.R
pweight/tests/exp_weights_tests.R
pweight/tests/iGWAS_tests.R
pweight/tests/bayes_weights_tests.R
pweight/NAMESPACE
pweight/R
pweight/R/spjotvoll_weights.R
pweight/R/pweight.R
pweight/R/onAttach.R
pweight/R/c_1.R
pweight/R/find_crossing.R
pweight/R/exp_weights.R
pweight/R/bayes_weights.R
pweight/R/iGWAS.R
pweight/R/g_fun.R
pweight/vignettes
pweight/vignettes/pweight-basics.Rmd
pweight/vignettes/iGWAS-DataExample.Rmd
pweight/vignettes/weighted.bib
pweight/README.md
pweight/MD5
pweight/build
pweight/build/vignette.rds
pweight/DESCRIPTION
pweight/man
pweight/man/find_crossing.Rd
pweight/man/exp_weights.Rd
pweight/man/g_fun.Rd
pweight/man/c_1.Rd
pweight/man/spjotvoll_weights.Rd
pweight/man/bayes_weights.Rd
pweight/man/iGWAS.Rd
pweight/man/pweight.Rd