This R package contains open source implementations of several pvalue weighting methods, including Spjotvoll, exponential and Bayes weights. These are methods for improving power in multiple testing via the use of prior information.
Author  Edgar Dobriban [aut, cre], Kristen Fortney [aut] 
Date of publication  20150729 11:08:38 
Maintainer  Edgar Dobriban <dobriban@stanford.edu> 
License  GPL3 
Version  0.0.1 
URL  https://github.com/dobriban/pweight 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:



All man pages Function index File listing
Man pages  

bayes_weights: Bayes pvalue weights  
c_1: Find the location of the smaller maximum of the generic term...  
exp_weights: Exponential pvalue weights  
find_crossing: find the crossing point of the two competing maxima  
g_fun: compute the dual constraint function: 1 if lambda <= l_prime,...  
iGWAS: informed GenomeWide Association Study  
pweight: pweight: Pvalue weighting in multiple testing.  
spjotvoll_weights: Spjotvoll pvalue weights 
Functions  

bayes_weights  Man page Source code 
c_1  Man page Source code 
exp_weights  Man page Source code 
find_crossing  Man page Source code 
g_fun  Man page Source code 
iGWAS  Man page Source code 
onAttach  Source code 
pweight  Man page 
pweightpackage  Man page 
spjotvoll_weights  Man page Source code 
Files  

inst
 
inst/doc
 
inst/doc/pweightbasics.Rmd  
inst/doc/iGWASDataExample.html
 
inst/doc/iGWASDataExample.Rmd  
inst/doc/pweightbasics.R  
inst/doc/pweightbasics.html
 
inst/doc/iGWASDataExample.R  
tests
 
tests/spjotvoll_weights_tests.R  
tests/exp_weights_tests.R  
tests/iGWAS_tests.R  
tests/bayes_weights_tests.R  
NAMESPACE
 
R
 
R/spjotvoll_weights.R  
R/pweight.R  
R/onAttach.R  
R/c_1.R  
R/find_crossing.R  
R/exp_weights.R  
R/bayes_weights.R  
R/iGWAS.R  
R/g_fun.R  
vignettes
 
vignettes/pweightbasics.Rmd  
vignettes/iGWASDataExample.Rmd  
vignettes/weighted.bib
 
README.md  
MD5
 
build
 
build/vignette.rds
 
DESCRIPTION
 
man
 
man/find_crossing.Rd  
man/exp_weights.Rd  
man/g_fun.Rd  
man/c_1.Rd  
man/spjotvoll_weights.Rd  
man/bayes_weights.Rd  
man/iGWAS.Rd  
man/pweight.Rd 
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.
Please suggest features or report bugs in the GitHub issue tracker.
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