qPCR.CT: qPCR data analysis and plot package

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use 2^ddCT methods calculate the relative gene expression, data file can be export from bio-rad qpcr machine, the results can be plot with errorbar. ver 1.1 add GroupPlot function, can plot all the groups once.

Author
Yuzhuo Pan, Xiaoyu Yan, Junxin Li
Date of publication
2012-10-29 08:59:32
Maintainer
Yuzhuo Pan <yuzhuo.pan@gmail.com>
License
GPL-2
Version
1.1

View on CRAN

Man pages

Calc.Expr
calculate the relative expression
cal_ct
caculate CT in PCR
cal.CT
Calculate the Final Results with CT values.
con_gene_name
gene name/char ...
con_group_name
group name/char
filename
filename/character
GroupPlot
~~PLOT all graph in the group ... ~~
plot.CT
Plot function
qPCR.CT-package
qPCR data analysis and plot package
repeatnum
repeat/number
tr_gene_name
gene name/char
tr_group_name
group name/char

Files in this package

qPCR.CT
qPCR.CT/data
qPCR.CT/data/con_group_name.rda
qPCR.CT/data/filename.rda
qPCR.CT/data/tr_gene_name.rda
qPCR.CT/data/repeatnum.rda
qPCR.CT/data/cal.CT.rda
qPCR.CT/data/con_gene_name.rda
qPCR.CT/data/tr_group_name.rda
qPCR.CT/NAMESPACE
qPCR.CT/man
qPCR.CT/man/con_group_name.Rd
qPCR.CT/man/Calc.Expr.Rd
qPCR.CT/man/GroupPlot.Rd
qPCR.CT/man/tr_group_name.Rd
qPCR.CT/man/tr_gene_name.Rd
qPCR.CT/man/filename.Rd
qPCR.CT/man/qPCR.CT-package.Rd
qPCR.CT/man/cal.CT.Rd
qPCR.CT/man/con_gene_name.Rd
qPCR.CT/man/repeatnum.Rd
qPCR.CT/man/plot.CT.Rd
qPCR.CT/man/cal_ct.Rd
qPCR.CT/DESCRIPTION
qPCR.CT/MD5
qPCR.CT/R
qPCR.CT/R/cal_ct.R
qPCR.CT/R/zzz.r
qPCR.CT/R/plot.CT.R
qPCR.CT/R/Calc.Expr.R
qPCR.CT/R/GroupPlot.R