qPCR.CT: qPCR data analysis and plot package
Version 1.1

use 2^ddCT methods calculate the relative gene expression, data file can be export from bio-rad qpcr machine, the results can be plot with errorbar. ver 1.1 add GroupPlot function, can plot all the groups once.

Browse man pages Browse package API and functions Browse package files

AuthorYuzhuo Pan, Xiaoyu Yan, Junxin Li
Date of publication2012-10-29 08:59:32
MaintainerYuzhuo Pan <yuzhuo.pan@gmail.com>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("qPCR.CT")

Man pages

Calc.Expr: calculate the relative expression
cal_ct: caculate CT in PCR
cal.CT: Calculate the Final Results with CT values.
con_gene_name: gene name/char ...
con_group_name: group name/char
filename: filename/character
GroupPlot: ~~PLOT all graph in the group ... ~~
plot.CT: Plot function
qPCR.CT-package: qPCR data analysis and plot package
repeatnum: repeat/number
tr_gene_name: gene name/char
tr_group_name: group name/char

Functions

Calc.Expr Man page Source code
First.lib Source code
GroupPlot Man page Source code
cal.CT Man page
cal_ct Man page Source code
con_gene_name Man page
con_group_name Man page
filename Man page
plot.CT Man page Source code
qPCR.CT Man page
qPCR.CT-package Man page
repeatnum Man page
tr_gene_name Man page
tr_group_name Man page

Files

data
data/con_group_name.rda
data/filename.rda
data/tr_gene_name.rda
data/repeatnum.rda
data/cal.CT.rda
data/con_gene_name.rda
data/tr_group_name.rda
NAMESPACE
man
man/con_group_name.Rd
man/Calc.Expr.Rd
man/GroupPlot.Rd
man/tr_group_name.Rd
man/tr_gene_name.Rd
man/filename.Rd
man/qPCR.CT-package.Rd
man/cal.CT.Rd
man/con_gene_name.Rd
man/repeatnum.Rd
man/plot.CT.Rd
man/cal_ct.Rd
DESCRIPTION
MD5
R
R/cal_ct.R
R/zzz.r
R/plot.CT.R
R/Calc.Expr.R
R/GroupPlot.R
qPCR.CT documentation built on May 20, 2017, 1:41 a.m.