qgraph: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation

Can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.

AuthorSacha Epskamp, Giulio Costantini, Jonas Haslbeck, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Date of publication2017-03-27 14:41:42 UTC
MaintainerSacha Epskamp <mail@sachaepskamp.com>
LicenseGPL-2
Version1.4.3
http://sachaepskamp.com/qgraph

View on CRAN

Man pages

as.igraph: Converts qgraph object to igraph object.

averageLayout: Computes an average layout over several graphs

big5: Big 5 dataset

big5groups: Big 5 groups list

CentAndClusfuns: Centrality and Clustering plots and tables

centrality: Centrality statistics of graphs

centrality_auto: Automatic centrality statistics of graphs

clustcoef_auto: Local clustering coefficients.

cor_auto: Automatically compute an apppropriate correlation matrix

EBICglasso: Compute Gaussian graphical model using graphical lasso based...

FDRnetwork: Model selection using local False Discovery Rate

findGraph: Search for optimal correlation or partial correlation network

getWmat: Obtain a weights matrix

ggmFit: Obtain fit measures of a Gaussian graphical model

makeBW: A qgraph plot can be understood in black and white

mat2vec: Weights matrix to vector

pathways: Highlight shortest pathways in a network

plot.qgraph: Plot method for "qgraph"

print.qgraph: Print edgelist

qgraph: qgraph

qgraph.animate: Animate a growing network

qgraphAnnotate: Annotates a qgraph object with mouseover tooltips in a HTML...

qgraph.cfa: CFA using Structural Equation Modelling

qgraph_efa: qgraph.efa

qgraph.gui: Graphical user interface for qgraph

qgraph.lavaan: qgraph: Structural Equation Modelling

qgraph.layout.fruchtermanreingold: qgraph.layout.fruchtermanreingold

qgraph_loadings: qgraph.loadings

qgraphMixed: Plots a mixed graph with both directed and undirected edges.

qgraph.panel: qgraph.panel

qgraph_pca: qgraph.pca

qgraph_sem: qgraph: Structural Equation Modelling

qgraph.semModel: qgraph: SEM model pathdiagram

qgraph_svg: qgraph.svg

smallworldIndex: Small-world index of unweighted graph

smallworldness: Compute the small-worldness index.

summary.qgraph: Summary method for "qgraph"

VARglm: Computes a vector autoregressive lag-1 model using GLM

wi2net: Converts precision matrix to partial correlation matrix

Functions

as.igraph.qgraph Man page
averageLayout Man page
big5 Man page
big5groups Man page
centrality Man page
centrality_auto Man page
centralityPlot Man page
centralityTable Man page
clustcoef_auto Man page
clusteringPlot Man page
clusteringTable Man page
clustOnnela Man page
clustWS Man page
clustZhang Man page
cor_auto Man page
EBICglasso Man page
FDRnetwork Man page
findGraph Man page
getWmat Man page
getWmat.data.frame Man page
getWmat.igraph Man page
getWmat.matrix Man page
getWmat.qgraph Man page
ggmFit Man page
makeBW Man page
mat2vec Man page
pathways Man page
plot.qgraph Man page
print.qgraph Man page
qgraph Man page
qgraph.animate Man page
qgraphAnnotate Man page
qgraph.cfa Man page
qgraph.efa Man page
qgraph.gui Man page
qgraph.lavaan Man page
qgraph.layout.fruchtermanreingold Man page
qgraph.loadings Man page
qgraphMixed Man page
qgraph.panel Man page
qgraph.pca Man page
qgraph.sem Man page
qgraph.semModel Man page
qgraph.svg Man page
smallworldIndex Man page
smallworldness Man page
summary.qgraph Man page
VARglm Man page
wi2net Man page

Files

qgraph
qgraph/COPYING
qgraph/inst
qgraph/inst/COPYING
qgraph/inst/CITATION
qgraph/inst/COPYRIGHTS
qgraph/src
qgraph/src/layout.c
qgraph/src/registration.c
qgraph/NAMESPACE
qgraph/NEWS
qgraph/data
qgraph/data/big5.RData
qgraph/data/big5groups.RData
qgraph/R
qgraph/R/IntInNode.r
qgraph/R/cor_auto.R qgraph/R/qgraph_cfa.R qgraph/R/qgraphD3.R qgraph/R/Fade.R qgraph/R/drawEdge.R qgraph/R/makeBW.R qgraph/R/DrawArrow.R qgraph/R/centralityPlot.R qgraph/R/addTrans.R qgraph/R/fixnames.R qgraph/R/averageLayout.R qgraph/R/glasso_methods.R qgraph/R/qgraph.R qgraph/R/getArgs.R qgraph/R/layout.R qgraph/R/qgraphGUI.R qgraph/R/clusteringPlot.R qgraph/R/sign0.R qgraph/R/pathways.R qgraph/R/centralityTable.R qgraph/R/centralityFunctions.R qgraph/R/ggmFit.R qgraph/R/mixCols.R qgraph/R/drawNode.R qgraph/R/qgraphAnnotate.R qgraph/R/logGaus.R qgraph/R/centrality.R qgraph/R/PLOT.R qgraph/R/qgraph_sem.R qgraph/R/qgraph.lavaan.R qgraph/R/printplotsummary.R qgraph/R/pie2.R qgraph/R/addTitle.R qgraph/R/mixGraphs.R qgraph/R/qgraph_loadings.R qgraph/R/mapusr2in.R qgraph/R/qgraph_Efa.R qgraph/R/qgraph_arrow.R qgraph/R/qgraph_growth.R qgraph/R/qgraph_pca.R qgraph/R/EBICgraph.R qgraph/R/igraphConversion.R qgraph/R/XKCD.R qgraph/R/qgraphBoot.R qgraph/R/smallworldIndex.R qgraph/R/SelfLoop.R qgraph/R/findGraph.R qgraph/R/getWmat.R qgraph/R/toJSONarray.R qgraph/R/qgraph_mixed.R qgraph/R/clusteringTable.R qgraph/R/qgraph.rack.R qgraph/R/palettes.R qgraph/R/scale2.R qgraph/R/FDRnetwork.R qgraph/R/isColor.R qgraph/R/00PolyShapes.R qgraph/R/qgraph.panel.R qgraph/R/VARglm.R qgraph/R/qgraph_semModel.R qgraph/R/Cent2EdgeNode.R qgraph/R/qgraph_svg.R
qgraph/MD5
qgraph/README
qgraph/DESCRIPTION
qgraph/COPYRIGHTS
qgraph/man
qgraph/man/qgraph_svg.Rd qgraph/man/print.qgraph.Rd qgraph/man/pathways.Rd qgraph/man/averageLayout.Rd qgraph/man/EBICglasso.Rd qgraph/man/ggmFit.Rd qgraph/man/CentAndClusfuns.Rd qgraph/man/qgraph_loadings.Rd qgraph/man/big5.Rd qgraph/man/as.igraph.Rd qgraph/man/qgraph.cfa.Rd qgraph/man/qgraphAnnotate.Rd qgraph/man/wi2net.Rd qgraph/man/qgraph.semModel.Rd qgraph/man/qgraph_sem.Rd qgraph/man/smallworldness.Rd qgraph/man/qgraph.Rd qgraph/man/qgraph_efa.Rd qgraph/man/mat2vec.Rd qgraph/man/qgraph.panel.Rd qgraph/man/qgraph.gui.Rd qgraph/man/centrality_auto.Rd qgraph/man/makeBW.Rd qgraph/man/clustcoef_auto.Rd qgraph/man/qgraph_pca.Rd qgraph/man/FDRnetwork.Rd qgraph/man/getWmat.Rd qgraph/man/VARglm.Rd qgraph/man/smallworldIndex.Rd qgraph/man/findGraph.Rd qgraph/man/big5groups.Rd qgraph/man/cor_auto.Rd qgraph/man/plot.qgraph.Rd qgraph/man/qgraph.layout.fruchtermanreingold.Rd qgraph/man/centrality.Rd qgraph/man/qgraph.lavaan.Rd qgraph/man/summary.qgraph.Rd qgraph/man/qgraphMixed.Rd qgraph/man/qgraph.animate.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.