qgraph: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation
Version 1.4.3

Can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.

Browse man pages Browse package API and functions Browse package files

AuthorSacha Epskamp, Giulio Costantini, Jonas Haslbeck, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Date of publication2017-03-27 14:41:42 UTC
MaintainerSacha Epskamp <mail@sachaepskamp.com>
LicenseGPL-2
Version1.4.3
URL http://sachaepskamp.com/qgraph
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("qgraph")

Man pages

as.igraph: Converts qgraph object to igraph object.
averageLayout: Computes an average layout over several graphs
big5: Big 5 dataset
big5groups: Big 5 groups list
CentAndClusfuns: Centrality and Clustering plots and tables
centrality: Centrality statistics of graphs
centrality_auto: Automatic centrality statistics of graphs
clustcoef_auto: Local clustering coefficients.
cor_auto: Automatically compute an apppropriate correlation matrix
EBICglasso: Compute Gaussian graphical model using graphical lasso based...
FDRnetwork: Model selection using local False Discovery Rate
findGraph: Search for optimal correlation or partial correlation network
getWmat: Obtain a weights matrix
ggmFit: Obtain fit measures of a Gaussian graphical model
makeBW: A qgraph plot can be understood in black and white
mat2vec: Weights matrix to vector
pathways: Highlight shortest pathways in a network
plot.qgraph: Plot method for "qgraph"
print.qgraph: Print edgelist
qgraph: qgraph
qgraph.animate: Animate a growing network
qgraphAnnotate: Annotates a qgraph object with mouseover tooltips in a HTML...
qgraph.cfa: CFA using Structural Equation Modelling
qgraph_efa: qgraph.efa
qgraph.gui: Graphical user interface for qgraph
qgraph.lavaan: qgraph: Structural Equation Modelling
qgraph.layout.fruchtermanreingold: qgraph.layout.fruchtermanreingold
qgraph_loadings: qgraph.loadings
qgraphMixed: Plots a mixed graph with both directed and undirected edges.
qgraph.panel: qgraph.panel
qgraph_pca: qgraph.pca
qgraph_sem: qgraph: Structural Equation Modelling
qgraph.semModel: qgraph: SEM model pathdiagram
qgraph_svg: qgraph.svg
smallworldIndex: Small-world index of unweighted graph
smallworldness: Compute the small-worldness index.
summary.qgraph: Summary method for "qgraph"
VARglm: Computes a vector autoregressive lag-1 model using GLM
wi2net: Converts precision matrix to partial correlation matrix

Functions

APLr Source code
ArrowMidPoint Source code
ArrowRadIn Source code
Cent2Edge Source code
Cr Source code
DrawArrow Source code
EBIC Source code
EBICglasso Man page Source code
EBICgraph Source code
FDRnetwork Man page Source code
Fade Source code
IntInNode Source code
PerpMid Source code
SelfLoop Source code
VARglm Man page Source code
addTitle Source code
addTrans Source code
as.igraph.qgraph Man page Source code
atan2usr2in Source code
averageLayout Man page Source code
averageWmat Source code
big5 Man page
big5groups Man page
centrality Man page Source code
centralityPlot Man page Source code
centralityTable Man page Source code
centrality_auto Man page Source code
clustOnnela Man page Source code
clustWS Man page Source code
clustZhang Man page Source code
clustcoef_auto Man page Source code
clusteringPlot Man page Source code
clusteringTable Man page Source code
colorblind Source code
colstripalpha Source code
cor_auto Man page Source code
darken Source code
drawEdge Source code
drawNode Source code
estimateNetwork Source code
findGraph Man page Source code
fixnames Source code
getArgs Source code
getWmat Man page Source code
getWmat.bootnetResult Source code
getWmat.data.frame Man page Source code
getWmat.igraph Man page Source code
getWmat.list Source code
getWmat.matrix Man page Source code
getWmat.qgraph Man page Source code
ggmEBIC Source code
ggmFit Man page Source code
ggplot_palette Source code
goodNum Source code
in2usrX Source code
in2usrY Source code
isColor Source code
logGaus Source code
makeBW Man page Source code
mat2vec Man page Source code
mixCols Source code
mixGraphs Source code
nextcomb Source code
pathways Man page Source code
pie2 Source code
plot.ggmFit Source code
plot.qgraph Man page Source code
print.ggmFit Source code
print.qgraph Man page Source code
qgraph Man page Source code
qgraph.animate Man page Source code
qgraph.arrow Source code
qgraph.cfa Man page Source code
qgraph.efa Man page Source code
qgraph.gui Man page Source code
qgraph.lavaan Man page Source code
qgraph.layout.fruchtermanreingold Man page Source code
qgraph.loadings Man page Source code
qgraph.panel Man page Source code
qgraph.pca Man page Source code
qgraph.rack Source code
qgraph.sem Man page Source code
qgraph.semModel Man page Source code
qgraph.svg Man page Source code
qgraphAnnotate Man page Source code
qgraphBoot Source code
qgraphD3 Source code
qgraphMixed Man page Source code
scale2 Source code
sign0 Source code
smallworldIndex Man page Source code
smallworldness Man page Source code
smoothAnimationList Source code
smoothLayout Source code
stepGraphs Source code
summary.qgraph Man page Source code
toJSONarray Source code
usr2inX Source code
usr2inX2 Source code
usr2inY Source code
usr2inY2 Source code
wi2net Man page Source code
xkcd_jitter Source code

Files

COPYING
inst
inst/COPYING
inst/CITATION
inst/COPYRIGHTS
src
src/layout.c
src/registration.c
NAMESPACE
NEWS
data
data/big5.RData
data/big5groups.RData
R
R/IntInNode.r
R/cor_auto.R
R/qgraph_cfa.R
R/qgraphD3.R
R/Fade.R
R/drawEdge.R
R/makeBW.R
R/DrawArrow.R
R/centralityPlot.R
R/addTrans.R
R/fixnames.R
R/averageLayout.R
R/glasso_methods.R
R/qgraph.R
R/getArgs.R
R/layout.R
R/qgraphGUI.R
R/clusteringPlot.R
R/sign0.R
R/pathways.R
R/centralityTable.R
R/centralityFunctions.R
R/ggmFit.R
R/mixCols.R
R/drawNode.R
R/qgraphAnnotate.R
R/logGaus.R
R/centrality.R
R/PLOT.R
R/qgraph_sem.R
R/qgraph.lavaan.R
R/printplotsummary.R
R/pie2.R
R/addTitle.R
R/mixGraphs.R
R/qgraph_loadings.R
R/mapusr2in.R
R/qgraph_Efa.R
R/qgraph_arrow.R
R/qgraph_growth.R
R/qgraph_pca.R
R/EBICgraph.R
R/igraphConversion.R
R/XKCD.R
R/qgraphBoot.R
R/smallworldIndex.R
R/SelfLoop.R
R/findGraph.R
R/getWmat.R
R/toJSONarray.R
R/qgraph_mixed.R
R/clusteringTable.R
R/qgraph.rack.R
R/palettes.R
R/scale2.R
R/FDRnetwork.R
R/isColor.R
R/00PolyShapes.R
R/qgraph.panel.R
R/VARglm.R
R/qgraph_semModel.R
R/Cent2EdgeNode.R
R/qgraph_svg.R
MD5
README
DESCRIPTION
COPYRIGHTS
man
man/qgraph_svg.Rd
man/print.qgraph.Rd
man/pathways.Rd
man/averageLayout.Rd
man/EBICglasso.Rd
man/ggmFit.Rd
man/CentAndClusfuns.Rd
man/qgraph_loadings.Rd
man/big5.Rd
man/as.igraph.Rd
man/qgraph.cfa.Rd
man/qgraphAnnotate.Rd
man/wi2net.Rd
man/qgraph.semModel.Rd
man/qgraph_sem.Rd
man/smallworldness.Rd
man/qgraph.Rd
man/qgraph_efa.Rd
man/mat2vec.Rd
man/qgraph.panel.Rd
man/qgraph.gui.Rd
man/centrality_auto.Rd
man/makeBW.Rd
man/clustcoef_auto.Rd
man/qgraph_pca.Rd
man/FDRnetwork.Rd
man/getWmat.Rd
man/VARglm.Rd
man/smallworldIndex.Rd
man/findGraph.Rd
man/big5groups.Rd
man/cor_auto.Rd
man/plot.qgraph.Rd
man/qgraph.layout.fruchtermanreingold.Rd
man/centrality.Rd
man/qgraph.lavaan.Rd
man/summary.qgraph.Rd
man/qgraphMixed.Rd
man/qgraph.animate.Rd
qgraph documentation built on May 20, 2017, 1:33 a.m.