convert2riself: Convert a cross to RIL by selfing

In qtl: Tools for Analyzing QTL Experiments

Convert a cross to RIL by selfing

Description

Convert a cross to type "riself" (RIL by selfing).

Usage

convert2riself(cross)

Arguments

cross

An object of class cross. See read.cross for details.

Details

If there are more genotypes with code 3 (BB) than code 2 (AB), we omit the genotypes with code==2 and call those with code==3 the BB genotypes.

If, instead, there are more genotypes with code 2 than code 3, we omit the genotypes with code==3 and call those with code==2 the BB genotypes.

Any chromosomes with class "X" (X chromosome) are changed to class "A" (autosomal).

Value

The input cross object, with genotype codes possibly changed and cross type changed to "riself".

Author(s)

Karl W Broman, [e-mail]

See Also

convert2risib

Examples

data(hyper)
hyper.as.riself <- convert2riself(hyper)

qtl documentation built on Sept. 11, 2024, 5:43 p.m.