probs_qtl2_to_doqtl: Convert R/qtl2 genotype probabilities to DOQTL format
In qtl2convert: Convert Data among QTL Mapping Packages
View source: R/probs_qtl2_to_doqtl.R
probs_qtl2_to_doqtl R Documentation
Convert R/qtl2 genotype probabilities to DOQTL format
Description
Convert R/qtl2 genotype probabilities to DOQTL format
Usage
probs_qtl2_to_doqtl(probs)
Arguments
probs
A "calc_genoprob" object (a list of 3d arrays of
genotype probabilities), as calculated by qtl2::calc_genoprob().
Details
If the arrays in probs all have 8 columns, they're assumed to be
allele dosages and we paste them all together into one big array.
Otherwise, it should be that the autosomes all have 36 columns the
X chromosome has 44. In this case, the male hemizygotes on the X
are placed where the female homozygotes are, and then we reorder
the genotypes into alphabetical order.
Value
A single three-dimensional array, for use with
DOQTL.
qtl2convert documentation built on May 29, 2024, 9:34 a.m.
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View source: R/probs_qtl2_to_doqtl.R
| probs_qtl2_to_doqtl | R Documentation |
Convert R/qtl2 genotype probabilities to DOQTL format
Description
Convert R/qtl2 genotype probabilities to DOQTL format
Usage
probs_qtl2_to_doqtl(probs)
Arguments
probs |
A |
Details
If the arrays in probs all have 8 columns, they're assumed to be
allele dosages and we paste them all together into one big array.
Otherwise, it should be that the autosomes all have 36 columns the X chromosome has 44. In this case, the male hemizygotes on the X are placed where the female homozygotes are, and then we reorder the genotypes into alphabetical order.
Value
A single three-dimensional array, for use with DOQTL.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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