Convert R/qtl2 genotype probabilities to DOQTL format
If the arrays in
probs all have 8 columns, they're assumed to be
allele dosages and we paste them all together into one big array.
Otherwise, it should be that the autosomes all have 36 columns the X chromosome has 44. In this case, the male hemizygotes on the X are placed where the female homozygotes are, and then we reorder the genotypes into alphabetical order.
A single three-dimensional array, for use with DOQTL.
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