qtl2fst: Database Storage of Genotype Probabilities for QTL Mapping

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

Package details

AuthorKarl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>), Brian S Yandell [aut] (<https://orcid.org/0000-0002-8774-9377>), Petr Simecek [aut] (<https://orcid.org/0000-0002-2922-7183>)
MaintainerKarl W Broman <broman@wisc.edu>
LicenseGPL-3
Version0.24
URL https://github.com/rqtl/qtl2fst
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("qtl2fst")

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qtl2fst documentation built on April 29, 2021, 1:05 a.m.