color_patterns_pheno: Set up col, pattern, shape and group for plotting.

In qtl2ggplot: Data Visualization for QTL Experiments

Set up col, pattern, shape and group for plotting.

Description

Set up col, pattern, shape and group for plotting.

Usage

color_patterns_pheno(
  scan1ggdata,
  lod,
  pattern,
  col,
  shape,
  patterns,
  facet = NULL
)

Arguments

scan1ggdata	data frame to be used for plotting
lod	matrix of LOD scores by position and pheno
pattern	allele pattern of form AB:CDEFGH
col	Color for color column in scan1ggdata
shape	Shape for shape column in scan1ggdata
patterns	Connect SDP patterns: one of c("none","all","hilit")
facet	use facet_wrap if not NULL

Value

data frame scan1ggdata with additional objects.

qtl2ggplot documentation built on March 31, 2023, 6:06 p.m.